Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20913
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    35   0.049
Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC024859-19|AAK29975.1|  139|Caenorhabditis elegans Hypothetical...    29   3.2  

>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +3

Query: 255  CNEFPVCVL*SLPYANETDFTSKYVLLIRNE*GCSRNTFCMINCR----ICC--SHSASA 416
            C + P CV    P      + +  V+L  N+ GC +N+ C++N +    ICC   H+ S+
Sbjct: 1605 CPDVPFCVEVQCPIPQRDLYRN--VILCENDGGCGKNSKCVLNPKTEMGICCHQKHTQSS 1662

Query: 417  PLDHR*TVARPSLDRH*TVARPSLDRHQTVADRGGS 524
             L+    +  P++      A P +    T+ DRG S
Sbjct: 1663 VLN----LISPAI----VAAAPEVIEATTIVDRGNS 1690


>Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical
           protein F09A5.2 protein.
          Length = 894

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 258 NEFPVCVL*SLPYANETDFTSKYVLLIRNE*GCSRNTFCMINCRICC 398
           NEF +C+  S P   + DF  + +L+I     C   T C I   +CC
Sbjct: 330 NEFEICIPDSQPSGKKEDFNWQLLLIIGIP--CISLTICCIAFFVCC 374


>U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical
           protein F20B6.5 protein.
          Length = 317

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 410 QRAARPSLDRRQTVARPSLDRR*TVTRPSPDRRRPRWERQMTP 538
           QR+ RPS    Q   R   D R T  RPS  R R +  R  TP
Sbjct: 127 QRSVRPSGSNAQPSGRAQPDYRDTRQRPSQSRDRSKQNRTGTP 169


>AC024859-19|AAK29975.1|  139|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.4 protein.
          Length = 139

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 448 GLATV*RWSSGALAECEQQIRQFIIQNVFREHPHSF 341
           G AT   +++GAL E   Q R  +I++  + HP  F
Sbjct: 75  GAATAAGYAAGALRERHYQTRDAVIEHYMKLHPEDF 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,909
Number of Sequences: 27780
Number of extensions: 298620
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)