Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20912
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    31   0.23 
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   2.1  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.1  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.7  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   6.4  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   6.4  

>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 593  PKPKPELKLEIRNPDPL---RRTNQPLNVKDLETRTSQSDKKSRRNHAKD 733
            PK + +++  IR P      + TN+  N+K  +T +S+SDKKS R    +
Sbjct: 1098 PKMESQIEHAIRTPVSSFAKQTTNKHANLKQKKTHSSKSDKKSSRRRKNE 1147


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 542 VKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRT 652
           V+  PND     P    P P P++K++ R P   R T
Sbjct: 9   VQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGPRLT 45


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +2

Query: 509 LKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETR 688
           L +  + +K  + Q+ N       H+E  + K E+K E + P+  ++       K    +
Sbjct: 181 LAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEK--VGQ 238

Query: 689 TSQSDKKSRRNHAKD 733
            S SD K++ + +KD
Sbjct: 239 PSSSDDKAKGSTSKD 253


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 432 SEQFELHGVCFPNRWVAGPSPNVACTSNPIDNLGIP 325
           S+Q        P+  +  PSP+++ T  P  N+G P
Sbjct: 548 SQQLNPAPTAMPHPNITSPSPSISVTQRPAVNVGPP 583


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 554 PNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSD 703
           P      N   E+P  KP +   + +P P+  TN+   + D++T +   D
Sbjct: 203 PTQGASSNVTPESPPEKP-IPSFVLSPPPVSATNEANKLSDIQTSSPSQD 251


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 22  QASGGFEVKIQI*KVSYHSACVCSCE--NVHGALEITE 129
           +++G  ++ IQI +  YH+A   SCE   V G  E  E
Sbjct: 519 ESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYE 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,113
Number of Sequences: 5004
Number of extensions: 53469
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)