Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20912
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0621 + 21289938-21290127,21290436-21290656,21292456-212929... 32 0.55
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 30 2.2
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545... 30 2.2
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 29 3.9
02_05_0930 - 32801737-32801936,32802038-32802107 29 5.1
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343... 28 6.7
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 28 6.7
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254... 28 8.9
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648 28 8.9
03_03_0056 + 14127721-14128021,14128122-14128343,14129213-141293... 28 8.9
>12_02_0621 +
21289938-21290127,21290436-21290656,21292456-21292956,
21293595-21293708
Length = 341
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 536 SWLVGTFALISPRDS---SSAYYDEN*NQYCQSHTADDQS 426
SW + F LIS RDS + Y E YCQ+ TA D S
Sbjct: 101 SWPIDVFGLISVRDSLDRNRNYIFERTRNYCQTLTAKDSS 140
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +2
Query: 503 EILKQKFQPAKNRVKQYPNDLTHHNP--HAEAPKPKPELKLEIRNPDPLRRTNQPLNVKD 676
E+ K+ A +R+ P D H +P + + KP +LE+ + P ++
Sbjct: 1369 EVSKELQCTADSRLDALPKD--HFSPVVNGQEVLDKPRSQLEVVSTS-YDGNQAPDSMNG 1425
Query: 677 LETRTSQSDKKSRRNH--AKDD 736
LET+ + DKK ++ H KDD
Sbjct: 1426 LETKEKKKDKKDKKRHRDKKDD 1447
>04_04_0126 +
22952577-22952871,22952912-22953519,22954125-22954596,
22954882-22954955,22955559-22955937,22956659-22956711
Length = 626
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 586 RSAETETRTQARNTKPGSPKTNEPTSQREGLRDQNL 693
R +TE + + R + G+P+T P ++R+ RD+ L
Sbjct: 486 RYRKTEAKNRKRAAEKGNPQTKSPLTRRKSERDEAL 521
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 568 ASQPSCRSAETETRTQARNTKPGSPKTNEPTSQREGLRDQNLTVG*KVKAQPRQR 732
A + S S E + RNT G +++ L DQN +VG V+A+ R
Sbjct: 832 AIEKSVHSEEDTSFGNTRNTSTGMARSSFGADYNSELHDQNQSVGASVEARSTMR 886
>02_05_0930 - 32801737-32801936,32802038-32802107
Length = 89
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 270 CNVVCNKTHHNYDSGLCVKECQ 335
C V N+ + DSGLCV CQ
Sbjct: 33 CTEVINREYPTCDSGLCVANCQ 54
>03_05_0331 -
23233883-23233972,23234099-23234164,23234300-23234365,
23234451-23234675,23234794-23235279
Length = 310
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 590 LRHEGCDASSH*GTASRGSWLVGTFALISPRDSSSAYYDEN*NQYCQSHTADDQSSLSF 414
L G +S++ T S S G+F LI+PR YY + N+ + +Q + F
Sbjct: 59 LHCNGGSSSAYSSTTSSNS-ASGSFTLIAPRSEYEGYYVSDSNEAALGISIQEQGAAQF 116
>02_05_0338 -
28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 200 PSRVI*AEATPARIRTHTNPDISLSVISKAPCTFSQEQTQALWYDTF*I*ILTSKP 33
PS +I + TP HT+ +S +S+AP +++T + D F + ++ P
Sbjct: 589 PSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTP 644
>06_01_0353 +
2545995-2546208,2546362-2546492,2546846-2546929,
2546972-2547316,2547327-2547582,2547683-2547879
Length = 408
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 70 YHSACVCSCENVHGALEITEREMSGFVCVLILAGVASAQITLDGIRC 210
YH+A + S NV+ ++ SGF V L +S+Q+ + +RC
Sbjct: 194 YHNASLSSRYNVNSYCDLLISIFSGFANVSTLPPPSSSQLLYNCMRC 240
>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
Length = 857
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +2
Query: 524 QPAKNRVKQ---YPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQ 658
Q A RV+ YP + + P+P P + +R P P ++ NQ
Sbjct: 542 QGANQRVRYTNPYPGGSSSQQQQQQQPRPAPRPQFVVRVPQPQQQQNQ 589
>03_03_0056 +
14127721-14128021,14128122-14128343,14129213-14129364,
14129449-14129719,14130621-14130853
Length = 392
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 219 DMSARRILLPG--DNRCAP--CNVVCNKTHHNYDSGLCVK 326
D+ A+ IL+PG C P N++ +K H++YD C+K
Sbjct: 229 DLGAKTILVPGIPPMGCIPRFLNLLPSKNHNDYDKLGCLK 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,697,703
Number of Sequences: 37544
Number of extensions: 388376
Number of successful extensions: 1213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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