Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20912
(738 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase D... 31 3.3
AL121674-3|CAI21745.1| 373|Homo sapiens chromodomain helicase D... 31 3.3
AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase D... 31 3.3
AL031669-4|CAI22256.1| 373|Homo sapiens chromodomain helicase D... 31 3.3
AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase D... 31 3.3
AL031667-6|CAI42981.1| 373|Homo sapiens chromodomain helicase D... 31 3.3
AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase D... 31 3.3
AF157326-1|AAF67492.1| 1230|Homo sapiens TIP120 protein protein. 30 7.5
BC010267-1|AAH10267.1| 814|Homo sapiens IQSEC1 protein protein. 30 10.0
AY653734-1|AAT72063.1| 963|Homo sapiens brefeldin resistant Arf... 30 10.0
AB018306-1|BAA34483.2| 843|Homo sapiens KIAA0763 protein protein. 30 10.0
>AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 2713
Score = 31.5 bits (68), Expect = 3.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 533 KNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKD-LETRTSQSDKK 709
K R K+ P D ++ +PKP+ K E + P R+ +P K+ E + KK
Sbjct: 92 KKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAEEPKKAKEHKEPKQKDGAKK 151
Query: 710 SRR 718
+R+
Sbjct: 152 ARK 154
>AL121674-3|CAI21745.1| 373|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 373
Score = 31.5 bits (68), Expect = 3.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 533 KNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKD-LETRTSQSDKK 709
K R K+ P D ++ +PKP+ K E + P R+ +P K+ E + KK
Sbjct: 129 KKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKK 188
Query: 710 SRR 718
+R+
Sbjct: 189 ARK 191
>AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 31.5 bits (68), Expect = 3.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 533 KNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKD-LETRTSQSDKK 709
K R K+ P D ++ +PKP+ K E + P R+ +P K+ E + KK
Sbjct: 94 KKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKK 153
Query: 710 SRR 718
+R+
Sbjct: 154 ARK 156
>AL031669-4|CAI22256.1| 373|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 373
Score = 31.5 bits (68), Expect = 3.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 533 KNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKD-LETRTSQSDKK 709
K R K+ P D ++ +PKP+ K E + P R+ +P K+ E + KK
Sbjct: 129 KKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKK 188
Query: 710 SRR 718
+R+
Sbjct: 189 ARK 191
>AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 31.5 bits (68), Expect = 3.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 533 KNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKD-LETRTSQSDKK 709
K R K+ P D ++ +PKP+ K E + P R+ +P K+ E + KK
Sbjct: 94 KKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKK 153
Query: 710 SRR 718
+R+
Sbjct: 154 ARK 156
>AL031667-6|CAI42981.1| 373|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 373
Score = 31.5 bits (68), Expect = 3.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 533 KNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKD-LETRTSQSDKK 709
K R K+ P D ++ +PKP+ K E + P R+ +P K+ E + KK
Sbjct: 129 KKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKK 188
Query: 710 SRR 718
+R+
Sbjct: 189 ARK 191
>AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 31.5 bits (68), Expect = 3.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 533 KNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKD-LETRTSQSDKK 709
K R K+ P D ++ +PKP+ K E + P R+ +P K+ E + KK
Sbjct: 94 KKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKK 153
Query: 710 SRR 718
+R+
Sbjct: 154 ARK 156
>AF157326-1|AAF67492.1| 1230|Homo sapiens TIP120 protein protein.
Length = 1230
Score = 30.3 bits (65), Expect = 7.5
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 145 FVCVL--ILAGVASAQITLDGIRC-GQLICQLDEYCSPETTDALRAMLSAIKHTITTI 309
F C + + A ++ I C GQ+IC L + P+ ++ L+ L +K+ IT +
Sbjct: 569 FTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGPDLSNTLQIFLERLKNEITRL 626
>BC010267-1|AAH10267.1| 814|Homo sapiens IQSEC1 protein protein.
Length = 814
Score = 29.9 bits (64), Expect = 10.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 572 HNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSD 703
H PH+ APK P + E+R P P R + L + R S+S+
Sbjct: 298 HGPHSGAPKSLPREEPELR-PRPPRPLDSHLAINGSANRQSKSE 340
>AY653734-1|AAT72063.1| 963|Homo sapiens brefeldin resistant
Arf-GEF 2b isoform protein.
Length = 963
Score = 29.9 bits (64), Expect = 10.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 572 HNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSD 703
H PH+ APK P + E+R P P R + L + R S+S+
Sbjct: 420 HGPHSGAPKSLPREEPELR-PRPPRPLDSHLAINGSANRQSKSE 462
>AB018306-1|BAA34483.2| 843|Homo sapiens KIAA0763 protein protein.
Length = 843
Score = 29.9 bits (64), Expect = 10.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 572 HNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSD 703
H PH+ APK P + E+R P P R + L + R S+S+
Sbjct: 300 HGPHSGAPKSLPREEPELR-PRPPRPLDSHLAINGSANRQSKSE 342
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,550,171
Number of Sequences: 237096
Number of extensions: 2028814
Number of successful extensions: 5965
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5956
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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