Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20912
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   9.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 318 KGRYRSYGVFYCRQHCTERIGCLRGAVFV 232
           +G Y  YG+    +  TER  C+  AV V
Sbjct: 147 EGSYGEYGIEVFTREATERNVCIAAAVKV 175


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 318 KGRYRSYGVFYCRQHCTERIGCLRGAVFV 232
           +G Y  YG+    +  TER  C+  AV V
Sbjct: 237 EGSYGEYGIEVFTREATERNVCIAAAVKV 265


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 212  PHLMPSRVI*AEATPARIRTHTNPDISLSVISKAPCTFSQ 93
            P +    VI    T   ++   NPD +  V S    TFS+
Sbjct: 935  PFVYTFNVIKLTKTSGTVQAQINPDFAFIVNSNLRLTFSK 974


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +2

Query: 524 QPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV 670
           +P   R+++ P     +N     P+P+P      R P+     N+P+ +
Sbjct: 110 RPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYI 158


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 66 YFLNLNFNFKASRGLTG 16
          Y+L   F+F  SRG+ G
Sbjct: 20 YYLTSTFDFWKSRGVVG 36


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 1   PTSVIARQASGGFEVKIQI*KVSYHSACV 87
           P  V+   A G FEV +      YH   V
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLV 141


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 593 PKPKPELKLEIRNPDPLRRTNQPLN 667
           P P   L L   +PD LRR  Q +N
Sbjct: 317 PFPFLMLPLGADDPDSLRRKRQKIN 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,587
Number of Sequences: 438
Number of extensions: 4247
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)