Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20911
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9U509 Cluster: Putative cuticle protein; n=1; Manduca ...    87   3e-16
UniRef50_Q9VY30 Cluster: CG12540-PA; n=2; Sophophora|Rep: CG1254...    51   2e-05
UniRef50_UPI0000DA320F Cluster: PREDICTED: hypothetical protein;...    35   1.5  
UniRef50_UPI0000F2AF38 Cluster: PREDICTED: similar to promyelocy...    33   4.6  

>UniRef50_Q9U509 Cluster: Putative cuticle protein; n=1; Manduca
           sexta|Rep: Putative cuticle protein - Manduca sexta
           (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 158

 Score = 87.4 bits (207), Expect = 3e-16
 Identities = 31/54 (57%), Positives = 44/54 (81%)
 Frame = +3

Query: 255 CCCDNPSFHGYGCRKTDCKFLYANSCEEYQLISNCCCVDLQKNSVDTPVVAPLI 416
           CCC++P +  + CRK+DC+ LYANSC+EY LI+NCCCVD+QK++V   VV P++
Sbjct: 99  CCCESPGYQPFHCRKSDCRSLYANSCDEYHLITNCCCVDVQKSAVAAAVVPPIV 152



 Score = 62.9 bits (146), Expect = 7e-09
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +1

Query: 178 PGAHPGCPLCDSSVYSYCSRKQAHDS 255
           PGAHPGCPLCDSSVYSYCS KQAHDS
Sbjct: 73  PGAHPGCPLCDSSVYSYCSYKQAHDS 98


>UniRef50_Q9VY30 Cluster: CG12540-PA; n=2; Sophophora|Rep:
           CG12540-PA - Drosophila melanogaster (Fruit fly)
          Length = 147

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 19/26 (73%), Positives = 20/26 (76%)
 Frame = +1

Query: 178 PGAHPGCPLCDSSVYSYCSRKQAHDS 255
           P   PGCPLCDSSVYSYCS K  HD+
Sbjct: 77  PAQQPGCPLCDSSVYSYCSHKMVHDA 102



 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 255 CCCD----NPSFHGYGCRKTDCKFLYANSCEEYQLISNCCC 365
           CCCD     P      C   DC  LYA SC E+ LI NCCC
Sbjct: 103 CCCDFPGGAPQLRPPQCLYYDCSLLYAKSCYEHALIKNCCC 143


>UniRef50_UPI0000DA320F Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 214

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 420 LRLMEPRQACPRNSSEDPHSSSWRSTDILHKSWRTGTCSPFCDIRSR 280
           LR     Q  P++S  +P  S W +T    + W  G CS  C  R R
Sbjct: 82  LRETSTSQTRPQSSRREPFQSYWNATKTQAERWPAGNCSCRCSFRVR 128


>UniRef50_UPI0000F2AF38 Cluster: PREDICTED: similar to promyelocytic
           leukemia protein; n=1; Monodelphis domestica|Rep:
           PREDICTED: similar to promyelocytic leukemia protein -
           Monodelphis domestica
          Length = 986

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 22/64 (34%), Positives = 29/64 (45%)
 Frame = -3

Query: 525 KYIFLLCYLNFMRSQCTGIQSKQMEQIVKLKCSIMLRLMEPRQACPRNSSEDPHSSSWRS 346
           ++ FLLC++  M S+C  + S      +   CS  L   EP   CP      P  SS RS
Sbjct: 178 EFCFLLCHVCKMESKCPKLLS-----CLHTVCSKCLESHEPAGQCPICRDSHPQDSSLRS 232

Query: 345 TDIL 334
            D L
Sbjct: 233 MDNL 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,820,333
Number of Sequences: 1657284
Number of extensions: 9830327
Number of successful extensions: 26376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26371
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)