Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20911
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0801 + 20670795-20671730                                         29   3.3  
08_01_0288 - 2327613-2327618,2327664-2327709,2327960-2328094,233...    29   3.3  
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229...    29   3.3  
09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116     28   5.7  
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357...    28   5.7  
04_04_0393 - 24894170-24894676,24895956-24896627,24897720-248979...    28   7.6  

>10_08_0801 + 20670795-20671730
          Length = 311

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 405 PRQACPRNSSEDPHSSSWRSTDILHKSWRTGTCSPFCDIRSREMKDYRSSRIMGL 241
           PR   P + +  P S  W  TD+L +  RT +   +C+    E K    +R+ GL
Sbjct: 226 PRTPTPYSPARTPASPMWLVTDLLRRR-RTVSFEDYCNEEEEERK-AAMARVRGL 278


>08_01_0288 -
           2327613-2327618,2327664-2327709,2327960-2328094,
           2330218-2330612,2330626-2330820
          Length = 258

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 172 ARPGAHPGCPLCDSSVYSYCSRKQAHDSAAAIILHFTATDVAKRTASS 315
           A P    G P C + ++ YC  ++A D   A +    AT  AK +  S
Sbjct: 44  AAPTDACGAPPCITPMHVYCVSERAPDDGEATVFAVAATKYAKESYES 91


>05_01_0294 -
           2291175-2291223,2291591-2292039,2292143-2292211,
           2292397-2292449,2292492-2294478
          Length = 868

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 487 THKVKITQEKNILLK*AKVILVNIKNYVIKQYTYIMYAI 603
           +HK K T+E++I    A+V+L    + +++ Y  I+YAI
Sbjct: 266 SHKNKTTEEEDIRGHTARVVLKLSPDLLVQSYPQILYAI 304


>09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116
          Length = 372

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/79 (30%), Positives = 33/79 (41%)
 Frame = +1

Query: 142 VSGQLSEQLPARPGAHPGCPLCDSSVYSYCSRKQAHDSAAAIILHFTATDVAKRTASSCT 321
           VSG   +  PA PG     P C SS  S   R    + AAA    +     +KR   + T
Sbjct: 220 VSGAQPQATPAAPGVARAPPRCSSS--SSLKRAAPAEDAAA-EAEYCRQSSSKRRREAET 276

Query: 322 PTLVKNIS*SPTAAVWIFR 378
           PT  K+ + +   A  + R
Sbjct: 277 PTPEKSAAAAAAPACRVLR 295


>02_03_0109 -
           15333228-15334793,15335255-15335392,15335496-15335771,
           15336357-15336422,15338140-15338487
          Length = 797

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 208 DSSVYSYCSRKQAHDSAAAII--LHFTATDVAKRTASSCTPTLV 333
           D +V+S      A DSA A++  LH++A D+ +   S  TP +V
Sbjct: 482 DITVFSPLHFFAASDSAEALLMTLHYSAADLNRPDGSGLTPVMV 525


>04_04_0393 -
           24894170-24894676,24895956-24896627,24897720-24897956,
           24898852-24899388,24899612-24899662,24900756-24900767
          Length = 671

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +1

Query: 139 AVSGQLSEQLPARPGAHPGCPL-CDSSVYSYCSRKQAHDSAAAIILHFTATDVAKRTASS 315
           A++  L   LP R     GC   CD+SV    S  +  D A   +  F   D AKR   +
Sbjct: 179 ALAKFLRAVLPERGAGGEGCRQGCDASVMIEGSGTERTDPANLSLGGFNVIDAAKRLLEA 238

Query: 316 CTPTLV 333
             P  V
Sbjct: 239 VCPVTV 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,799
Number of Sequences: 37544
Number of extensions: 263393
Number of successful extensions: 746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)