Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20911
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.64 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.64 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.64 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 657 FSQRKYQYFLVITKSTSIYRIHYIGILFNDI 565
           F   K  YF + T S    RIH+ G +   I
Sbjct: 100 FVNEKQSYFHIATTSNEFIRIHHSGSITRSI 130


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 657 FSQRKYQYFLVITKSTSIYRIHYIGILFNDI 565
           F   K  YF + T S    RIH+ G +   I
Sbjct: 100 FVNEKQSYFHIATTSNEFIRIHHSGSITRSI 130


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 657 FSQRKYQYFLVITKSTSIYRIHYIGILFNDI 565
           F   K  YF + T S    RIH+ G +   I
Sbjct: 39  FVNEKQSYFHIATTSNEFIRIHHSGSITRSI 69


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = +3

Query: 258 CCDNPSFHGYGCRKTDCKFLYANSCEEYQLISNC-CCVDLQKNSVDTPVVAP 410
           C   P    Y CR     +L  +  + +Q+  +C CC +  +      +  P
Sbjct: 43  CVPKP-IPSYACRGRCSSYLQVSGSKIWQMERSCMCCQESGEREASVSLFCP 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,134
Number of Sequences: 438
Number of extensions: 3141
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)