Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20911
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50290.1 68418.m06227 hypothetical protein                          29   3.6  
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P...    27   8.4  
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (...    27   8.4  
At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing ...    27   8.4  

>At5g50290.1 68418.m06227 hypothetical protein 
          Length = 335

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 255 CCCDNPSFHGYGCRKTDCKFLYANSCEEY 341
           C   +P F G+  +K  C+ +   SCEEY
Sbjct: 123 CSPKSPIFQGFPEKKVPCRNISGMSCEEY 151


>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to  At5g28170, At1g35110,
            At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
            At2g10350
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 456  MEQIVKLKCSIMLRLMEPRQACPRNSSEDPHSSSWRSTDILHKSWRTGTCSP 301
            +E +V +   ++ R  +P   C +N    P    W+  D L+K+ R+G C P
Sbjct: 993  IEPVVTIMPYLIQRYCKPE--CSQNHGLQPFY--WKRLDGLYKNLRSGDCGP 1040


>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 204

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 392 HACRGSINLSIIEHFSFTICSICF 463
           H+  GS+ + ++   S  +CSICF
Sbjct: 172 HSLAGSVRICVMASLSRALCSICF 195


>At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing
           protein
          Length = 311

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 151 QLSEQLPARPGAHPGCPLCDSSVYSYC 231
           Q  +Q P +P     CP CDSS   +C
Sbjct: 14  QQQQQQPQQPQPQLKCPRCDSSNTKFC 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,115
Number of Sequences: 28952
Number of extensions: 218643
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)