Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20910
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    26   0.28 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.37 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   3.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   7.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.9  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   7.9  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   7.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -2

Query: 610 PAEPQPRGTRRT-EPPYPPSGDGHSDPHGVPVAASFNF--EGFRLRLWHG 470
           P +P+P  T  +    + P  D H + +GVP      F  EG    +W G
Sbjct: 177 PPQPEPPVTFNSLNGAHTPLTDDHDEKYGVPTLEELGFDTEGRLPPVWQG 226


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 453 VQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLLHK**GT-HLQDSPFLSVNTLLL 277
           V++ S L    S+P LT ++P PV++   TST S           HL+DSP      L +
Sbjct: 137 VEKSSKLK-NKSAPILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHV 195

Query: 276 SVGLT 262
           S G T
Sbjct: 196 STGST 200


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 458 PITEPVPKPQPEPLEVEGCGYRNPMGVG 541
           P+T P P P   P  V   GY +PM  G
Sbjct: 116 PLT-PSPGPPSHPYTVISNGYSSPMSSG 142


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 467 EPVPKPQPEPLE 502
           EPVP P+P+P +
Sbjct: 394 EPVPTPEPQPTQ 405


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 461 ITEPVPKPQPEPLEVEGCGYRNPMGVGVTITGGWV 565
           ITE  P            G RNP+     +TG WV
Sbjct: 100 ITEVAPVLPGNYANASSVGSRNPIHTSSYMTGIWV 134


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 461 ITEPVPKPQPEPLEVEGCGYRNPMGVGVTITGGWV 565
           ITE  P            G RNP+     +TG WV
Sbjct: 333 ITEVAPVLPGNYANASSVGSRNPIHTSSYMTGIWV 367


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 461 ITEPVPKPQPEPLEVEGCGYRNPMGVGVTITGGWV 565
           ITE  P            G RNP+     +TG WV
Sbjct: 333 ITEVAPVLPGNYANASSVGSRNPIHTSSYMTGIWV 367


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 419 EDCQESVEICCTNP 460
           +DC E V+ C TNP
Sbjct: 94  KDCGEYVDWCSTNP 107


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 168 PGHDLRPCLASEHLRNAPHAGEAGTGN 248
           PG D+R  +A    +      EAG GN
Sbjct: 622 PGTDIRQSIALSRKKKCIRYMEAGDGN 648


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 168 PGHDLRPCLASEHLRNAPHAGEAGTGN 248
           PG D+R  +A    +      EAG GN
Sbjct: 514 PGTDIRQSIALSRKKKCIRYMEAGDGN 540


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 452 TNPITEPVPKPQPE 493
           +N I EPVP+P  E
Sbjct: 386 SNEIVEPVPQPVEE 399


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 308  ESCKCVPYYLCNK 346
            +   C  YYLCN+
Sbjct: 2245 DDTNCAQYYLCNQ 2257


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 455 NPITEPVPKPQPE 493
           +P T P P P PE
Sbjct: 94  SPTTPPTPSPPPE 106


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 285 ACLRIRTGNLANASPTIC 338
           +C+ +  G+  N++P+IC
Sbjct: 21  SCIAVGVGSGRNSAPSIC 38


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 441 STLSWQSSSPNLTSSTPHP 385
           S LS   ++PN +S++P+P
Sbjct: 56  SLLSPSGNTPNKSSTSPYP 74


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 627 VRWSRSPDTSSSRHDWRSHRL 689
           V+  R PD  S R  W+S R+
Sbjct: 35  VQGVRGPDFRSLRFSWKSARV 55


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 627 VRWSRSPDTSSSRHDWRSHRL 689
           V+  R PD  S R  W+S R+
Sbjct: 35  VQGVRGPDFRSLRFSWKSARV 55


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 666 HDWRSHRLQVRPGQFESKSR 725
           H    HR+Q++P    S SR
Sbjct: 13  HHLEPHRMQIKPQSPSSSSR 32


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 666 HDWRSHRLQVRPGQFESKSR 725
           H    HR+Q++P    S SR
Sbjct: 13  HHLEPHRMQIKPQSPSSSSR 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,015
Number of Sequences: 336
Number of extensions: 4245
Number of successful extensions: 24
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)