Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20910
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.2  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    28   1.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   3.7  
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    27   3.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.5  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.6  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -3

Query: 492 SGCGFGTGSVMGLVQQIS---TLSWQSSSPNLTSSTPHPVTLALLTST-PSLF 346
           SG    T  ++  + Q+S   T SW SSS  LT +    VT A+ T+  P +F
Sbjct: 154 SGITSNTDPIVDEIDQMSARFTFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 610 DALNESYAGVGVLIHPQVVMTGAHIAYKYAPGNLRA 717
           + L ++   V   IHPQV++ G  IA K A   LRA
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRA 139


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 313 RFPVLIRKHAVALRRLNDDVSRFPVPA 233
           R P L+ K    ++RLNDD  +   PA
Sbjct: 870 RLPALLAKKQYIIKRLNDDFQKVYFPA 896


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 5   FLRNQTKKVIMC*LVHSFRNTVT*NFVGSLSQSVLIKEAQCVRFC 139
           F+ ++ +KV +   +H F +T     +G++   +   E QC++ C
Sbjct: 23  FIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNC 67


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 507  STSRGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTP 355
            ST   S  G  T + +     +++ +  +SS  L SSTP   + AL TSTP
Sbjct: 933  STPITSSTGLNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTP 983


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -3

Query: 516 PHPSTSRGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPV 382
           P+P+T   S C     + + +   I+ L    S P L      PV
Sbjct: 166 PNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPV 210


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -2

Query: 628 TIRSKRPAEPQPRGTRRTEPPYPPSGDG--HSDPHGVP 521
           +I S RP E  P  +    PP PP  +G   S P+  P
Sbjct: 235 SIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPP 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,214
Number of Sequences: 5004
Number of extensions: 66114
Number of successful extensions: 327
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)