Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20910
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0019 + 19862171-19863049 33 0.18
12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368 32 0.42
01_02_0007 + 10132380-10133201 26 0.60
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 31 0.73
10_02_0017 - 4256125-4256152,4256206-4256411 30 1.7
02_05_0199 + 26667435-26667678,26667783-26667895,26668057-266682... 30 1.7
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.2
03_04_0133 + 17585278-17585282,17586257-17586386,17587444-175875... 29 3.9
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 29 5.1
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 28 6.8
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 28 9.0
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 28 9.0
04_04_0186 - 23405477-23405566,23406204-23406275,23406914-234071... 28 9.0
04_03_0703 - 18870287-18871351,18871542-18871733 28 9.0
>03_05_0019 + 19862171-19863049
Length = 292
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 619 SKRPAEPQPRGTRRTEPPYPPSGDGHSDP 533
+KRP EP P+ T+R +PP PP S P
Sbjct: 173 AKRPPEPPPKTTQRQQPPGPPPKPQPSAP 201
>12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368
Length = 487
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -3
Query: 507 STSRGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSL 349
S+SRG G G G G G +T S+ SSP+ STP P + A + P L
Sbjct: 154 SSSRGGGGGRGVGGGSGR----ATPSFPGSSPHHYPSTPTPASAAAAANYPPL 202
>01_02_0007 + 10132380-10133201
Length = 273
Score = 26.2 bits (55), Expect(2) = 0.60
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 455 NPITEPVPKPQPEP 496
NP +P+P+PQP+P
Sbjct: 67 NPQPQPLPQPQPQP 80
Score = 24.2 bits (50), Expect(2) = 0.60
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 470 PVPKPQPEPLEVEG 511
P P+PQP+PL + G
Sbjct: 88 PQPQPQPQPLPLPG 101
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 31.5 bits (68), Expect = 0.73
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 625 IRSKRPAEPQPRGTRRTEPPYPP-SGDGHSDPHGVPVA 515
IR+ P P PR RRT PP PP SG G P + VA
Sbjct: 31 IRNPTPPPPPPR--RRTPPPPPPGSGPGPQRPSYLSVA 66
>10_02_0017 - 4256125-4256152,4256206-4256411
Length = 77
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 252 PGSPCRLRRRGGRSEDVQKQGRV*GRVLG 166
P P ++RRRGG S V+ +G V GR G
Sbjct: 13 PSFPPQIRRRGGASAAVRSEGSVDGRPAG 41
>02_05_0199 +
26667435-26667678,26667783-26667895,26668057-26668250,
26668354-26668681
Length = 292
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 443 ICCTNPITEPVPKPQPEPLEVEGCGYRNPMG-VGVTITGGW 562
I C+ +++P PKP+P + + N G VT+T GW
Sbjct: 24 IACSRKLSKPKPKPKPSMKKPVVRAHNNYTGSPSVTVTTGW 64
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 610 PAEPQPRGTRRTEPPYPPSGDGHSDPHGVP-VAASFNFEGFRLRLWHGFRYGISAADLHA 434
P P P G ++ PP PP G S P P V + +L+ H + ++A D H+
Sbjct: 364 PPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVPTGSADQQAKLKPLHWDKVNVAATD-HS 422
Query: 433 LL 428
++
Sbjct: 423 MV 424
>03_04_0133 +
17585278-17585282,17586257-17586386,17587444-17587591,
17587661-17587849,17587999-17589150,17589303-17589466
Length = 595
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 625 IRSKRPAEPQPRGTRRTEPPYPPSGDGHSDP 533
+R +R P P+ R +EPP PP+ D + P
Sbjct: 1 MRFRRALAPDPQIGRGSEPPSPPASDRYRFP 31
>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
Length = 257
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 401 DVRFGEEDCQESVEICCTNPITEPVPKPQPEP 496
D+RF ++D E++E P+++P +P+P P
Sbjct: 166 DLRFIQKDSGETLEFHSKEPLSQPPIEPEPCP 197
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 579 RRVPLGCGSAGRFERIVRWSRSPDTSSSRHDW 674
R PLGC + +VR +++PDT+++ D+
Sbjct: 338 RETPLGCANGTDGFAVVRHAKAPDTTAATVDY 369
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 27.9 bits (59), Expect = 9.0
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = -2
Query: 535 PHGVPVAASFNFEGFRLRLWHGFRYGISAA---DLHALLAVFFAEPDI-QHSPPRHAGVI 368
P G+ + +++ F + LW + Y S + D+ ++ A DI +H P R
Sbjct: 1374 PLGIVLPPAYSI--FAMVLWRPYLYDTSTSNHEDIQLYQSLLGAISDITRHQPFRDVCFR 1431
Query: 367 NVHPFIVLVTQIVGDAFARFPVLIRKHAVALRRLN 263
N+H F L+ VGD+ V +R L+ L+
Sbjct: 1432 NMHLFYDLLAADVGDSEFAAIVELRSPDECLKALS 1466
>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 595 PRGTRRTEPPYPPSGDGHSDPHGVPVAASFN 503
P G P+PP HS P+ +P S +
Sbjct: 1020 PSGYPLPRMPFPPFAGAHSQPYAIPTRGSLH 1050
>04_04_0186 -
23405477-23405566,23406204-23406275,23406914-23407198,
23407300-23407305
Length = 150
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 625 IRSKRPAEPQPRGTRRTEPPYPPSGDGHSDPH 530
++ K+P P+ + EPP PP G PH
Sbjct: 74 VKEKKPDLPKKPDPPKPEPPKPPVRRGFPGPH 105
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -2
Query: 628 TIRSKRPAEPQPRGTRRTEPPYPPSG---DGHSDPHGVPVAAS 509
T R RP Q R R+ PP+PP+ D + P VAA+
Sbjct: 5 TRRKHRPTTRQRRKHRQINPPHPPAAATDDAAAIPEAPAVAAA 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,463,969
Number of Sequences: 37544
Number of extensions: 562253
Number of successful extensions: 3119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3074
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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