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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20909
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81072-1|CAB03019.1|  311|Caenorhabditis elegans Hypothetical pr...    83   2e-16
Z74036-5|CAA98489.3|  171|Caenorhabditis elegans Hypothetical pr...    47   2e-05
AY190131-1|AAO33925.1|  171|Caenorhabditis elegans CNB-1 protein.      47   2e-05
U55375-1|AAK82907.2|  199|Caenorhabditis elegans Neuronal calciu...    40   0.002
U41030-2|AAA82363.2|  191|Caenorhabditis elegans Neuronal calciu...    38   0.009
L33680-1|AAA85631.1|  191|Caenorhabditis elegans neuronal calciu...    38   0.009
AJ132193-1|CAA10601.1|  149|Caenorhabditis elegans calmodulin pr...    35   0.049
AF016429-2|AAB65364.1|  149|Caenorhabditis elegans Calmodulin pr...    35   0.049
AC084159-17|AAK39364.1|  116|Caenorhabditis elegans Hypothetical...    35   0.065
Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical pr...    34   0.086
AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C pr...    34   0.086
Z70783-6|CAA94856.1|  195|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U28731-1|AAA68298.1|  145|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U97193-14|AAB52442.2|  381|Caenorhabditis elegans Ring finger pr...    30   1.9  
U40423-5|AAA81454.2|  156|Caenorhabditis elegans Unidentified vi...    30   1.9  
AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z80216-5|CAB02282.1|  190|Caenorhabditis elegans Hypothetical pr...    29   2.4  
L33681-1|AAA85632.1|  190|Caenorhabditis elegans neuronal calciu...    29   2.4  
AL117203-2|CAB55104.1|  321|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormo...    29   2.4  
Z83240-3|CAB05813.2|  483|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z77653-1|CAB01124.1|  218|Caenorhabditis elegans Hypothetical pr...    28   7.5  
X04259-1|CAA27814.1|  161|Caenorhabditis elegans cal-1 protein.        28   7.5  
AC024858-1|AAF60872.2|  196|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z81072-1|CAB03019.1|  311|Caenorhabditis elegans Hypothetical
           protein F30A10.1 protein.
          Length = 311

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 6/87 (6%)
 Frame = +1

Query: 13  FTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTY------PEL 174
           FT E+L +Y+D T+FT+K+++  +++F AL P KV  N     P    LT+      PEL
Sbjct: 130 FTREQLDEYQDCTFFTRKDIIRLYKRFYALNPHKVPTNMQGNRPAITTLTFEEVEKMPEL 189

Query: 175 KVNPFKDRICKVFSSSNDGDCTFEDFL 255
           K NPFK RIC+VFS    G+ +F+DFL
Sbjct: 190 KENPFKRRICEVFSEDGRGNLSFDDFL 216



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/86 (41%), Positives = 57/86 (66%)
 Frame = +3

Query: 252 LDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
           LDM SVFSEMAP  +K ++AFRI+D+DGD+++G  DL ++I+ L   E  LSD E++ ++
Sbjct: 216 LDMFSVFSEMAPLQLKLKYAFRIYDYDGDELLGHDDLSKMIRSLTRDE--LSDVEVEFII 273

Query: 432 QNVXXXXXXXXXXXXSFAEFEHIIDK 509
           + +            +FAEFEH++ +
Sbjct: 274 ERIIEEADLDGDSSINFAEFEHVVSR 299


>Z74036-5|CAA98489.3|  171|Caenorhabditis elegans Hypothetical
           protein F55C10.1 protein.
          Length = 171

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 41/82 (50%)
 Frame = +3

Query: 261 MSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNV 440
           +S FS    K  K + AFRI+D D D  I   +L +V++ + G  LK  DS++QQ+V   
Sbjct: 79  ISQFSVKGDKNTKLKFAFRIYDMDRDGFISNGELFQVLKMMVGNNLK--DSQLQQIVDKT 136

Query: 441 XXXXXXXXXXXXSFAEFEHIID 506
                       SF EF  +++
Sbjct: 137 ILFHDKDGDGKISFQEFCDVVE 158



 Score = 34.7 bits (76), Expect = 0.065
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 109 EKVGHNKNAKLPMAKVLTYPELKVNPFKDRICKVFSSSNDGDCTFEDFLT-*CQFSVR 279
           +K+  + +  L + + ++ PEL+ NP   R+  +F    +G+  F +F+    QFSV+
Sbjct: 28  KKLDVDGSGSLSVEEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFREFIQGISQFSVK 85


>AY190131-1|AAO33925.1|  171|Caenorhabditis elegans CNB-1 protein.
          Length = 171

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 41/82 (50%)
 Frame = +3

Query: 261 MSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNV 440
           +S FS    K  K + AFRI+D D D  I   +L +V++ + G  LK  DS++QQ+V   
Sbjct: 79  ISQFSVKGDKNTKLKFAFRIYDMDRDGFISNGELFQVLKMMVGNNLK--DSQLQQIVDKT 136

Query: 441 XXXXXXXXXXXXSFAEFEHIID 506
                       SF EF  +++
Sbjct: 137 ILFHDKDGDGKISFQEFCDVVE 158



 Score = 34.7 bits (76), Expect = 0.065
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 109 EKVGHNKNAKLPMAKVLTYPELKVNPFKDRICKVFSSSNDGDCTFEDFLT-*CQFSVR 279
           +K+  + +  L + + ++ PEL+ NP   R+  +F    +G+  F +F+    QFSV+
Sbjct: 28  KKLDVDGSGSLSVEEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFREFIQGISQFSVK 85


>U55375-1|AAK82907.2|  199|Caenorhabditis elegans Neuronal calcium
           sensor familyprotein 3 protein.
          Length = 199

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = +1

Query: 10  QFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPELKVNPF 189
           + T EE+Q  E +TYFTKKE+   ++ F    P   G  K  +        +P    + F
Sbjct: 17  KLTTEEVQTLEQVTYFTKKELKKWYKDFVRDCPS--GELKMEEFQGIYKQFFPNGDPSKF 74

Query: 190 KDRICKVFSSSNDGDCTFEDFLT*CQFSVRWLLKQ 294
              +  VF  ++DG  +F +F+     + R  L +
Sbjct: 75  AAFVFNVFDDNHDGHISFSEFIAALSITSRGTLDE 109


>U41030-2|AAA82363.2|  191|Caenorhabditis elegans Neuronal calcium
           sensor familyprotein 1 protein.
          Length = 191

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +1

Query: 1   GKSQFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPELKV 180
           G S+    +++D  + TYFT+KE+   ++ F    P   G    A         +P+   
Sbjct: 4   GNSKLKSSQIRDLAEQTYFTEKEIKQWYKGFVRDCPN--GMLTEAGFQKIYKQFFPQGDP 61

Query: 181 NPFKDRICKVFSSSNDGDCTFEDFL 255
           + F   + KVF  + DG   F +F+
Sbjct: 62  SDFASFVFKVFDENKDGAIEFHEFI 86


>L33680-1|AAA85631.1|  191|Caenorhabditis elegans neuronal calcium
           binding protein protein.
          Length = 191

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +1

Query: 1   GKSQFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPELKV 180
           G S+    +++D  + TYFT+KE+   ++ F    P   G    A         +P+   
Sbjct: 4   GNSKLKSSQIRDLAEQTYFTEKEIKQWYKGFVRDCPN--GMLTEAGFQKIYKQFFPQGDP 61

Query: 181 NPFKDRICKVFSSSNDGDCTFEDFL 255
           + F   + KVF  + DG   F +F+
Sbjct: 62  SDFASFVFKVFDENKDGAIEFHEFI 86


>AJ132193-1|CAA10601.1|  149|Caenorhabditis elegans calmodulin
           protein.
          Length = 149

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +3

Query: 252 LDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
           L MM+   +      +   AFR+FD DG+  I  ++LR V   +  L  KL+D E+ +++
Sbjct: 70  LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHV---MTNLGEKLTDEEVDEMI 126

Query: 432 Q 434
           +
Sbjct: 127 R 127


>AF016429-2|AAB65364.1|  149|Caenorhabditis elegans Calmodulin
           protein 1 protein.
          Length = 149

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +3

Query: 252 LDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
           L MM+   +      +   AFR+FD DG+  I  ++LR V   +  L  KL+D E+ +++
Sbjct: 70  LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHV---MTNLGEKLTDEEVDEMI 126

Query: 432 Q 434
           +
Sbjct: 127 R 127


>AC084159-17|AAK39364.1|  116|Caenorhabditis elegans Hypothetical
           protein Y73B3A.12 protein.
          Length = 116

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +3

Query: 309 AFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQ 434
           AFR+FD DG+  I  ++LR V   +  L  KL+D E+ ++++
Sbjct: 38  AFRVFDKDGNGFISAAELRHV---MTNLGEKLTDEEVDEMIR 76


>Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical
           protein ZK673.7 protein.
          Length = 160

 Score = 34.3 bits (75), Expect = 0.086
 Identities = 14/44 (31%), Positives = 30/44 (68%)
 Frame = +3

Query: 309 AFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNV 440
           AFR++D +G+  I VSDLR++++    L+  +S+ E+ +++  +
Sbjct: 100 AFRLYDKEGNGYINVSDLRDILR---ALDDNVSEEELDEMIAEI 140


>AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C
           protein.
          Length = 160

 Score = 34.3 bits (75), Expect = 0.086
 Identities = 14/44 (31%), Positives = 30/44 (68%)
 Frame = +3

Query: 309 AFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNV 440
           AFR++D +G+  I VSDLR++++    L+  +S+ E+ +++  +
Sbjct: 100 AFRLYDKEGNGYINVSDLRDILR---ALDDNVSEEELDEMIAEI 140


>Z70783-6|CAA94856.1|  195|Caenorhabditis elegans Hypothetical
           protein ZK856.8 protein.
          Length = 195

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +1

Query: 19  EEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPELKVNPFKDR 198
           +EE+++    T F + +++  + +F +L  +  G      L     L  PEL VNP  DR
Sbjct: 11  DEEIEEIMSETEFNRNQIVRLYSRFLSLDKKGQGF-----LSRDDFLNVPELAVNPLGDR 65

Query: 199 ICKVF--SSSNDGD 234
           I   F   +S++GD
Sbjct: 66  IVDAFFTLASSNGD 79


>U28731-1|AAA68298.1|  145|Caenorhabditis elegans Hypothetical
           protein F12A10.5 protein.
          Length = 145

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +3

Query: 312 FRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQ 434
           F +FD +GD +I + DL   I  +C L  KL+++E +++++
Sbjct: 86  FNVFDKNGDGVISIDDL---IFVMCQLGEKLTETEAKEMIK 123


>U97193-14|AAB52442.2|  381|Caenorhabditis elegans Ring finger
           protein protein 1 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 439 TFCTSCCISESDSFNSSPHRRCITSRKSDTPIMSSPSKSNILNACSAFTAL 287
           TFCT C I    ++ +SPH  C T R        + +KSNI N    F+ +
Sbjct: 44  TFCTEC-IRNVQNYGNSPHLECPTCR--------AETKSNIENVAPNFSIM 85


>U40423-5|AAA81454.2|  156|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 2 protein.
          Length = 156

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 267 VFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNV 440
           V ++  P ++  +  F   D DGD  I  S+LR   QR   +   LSD +I+ + ++V
Sbjct: 81  VIAKANPLSLSLKAVFEELDVDGDGYITRSELRTAFQR---MGHSLSDQDIKAIYRHV 135


>AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical
           protein F59D6.7 protein.
          Length = 213

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +1

Query: 61  KKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPELKVNPFKDRICKVFSSSNDGD 234
           K ++L  + +F +L     G+     L     L  PEL VNP  DRI   F +  D D
Sbjct: 43  KHQILRLYTRFASLDKNGQGY-----LSRDDFLNVPELAVNPLGDRIIDAFFTLGDSD 95


>Z80216-5|CAB02282.1|  190|Caenorhabditis elegans Hypothetical
           protein F10G8.5 protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/84 (21%), Positives = 39/84 (46%)
 Frame = +1

Query: 4   KSQFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPELKVN 183
           K + ++E+L+  +  T FT++++   ++ F    P+  GH    +        +P     
Sbjct: 7   KPKLSKEDLEFLKKNTNFTEEQIKEWYKGFVQDCPK--GHLTKEQFIKVYKDFFPSGSAE 64

Query: 184 PFKDRICKVFSSSNDGDCTFEDFL 255
            F + + + F + N G   F++FL
Sbjct: 65  GFCEHVFRTFDTDNSGFIDFKEFL 88


>L33681-1|AAA85632.1|  190|Caenorhabditis elegans neuronal calcium
           binding protein protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/84 (21%), Positives = 39/84 (46%)
 Frame = +1

Query: 4   KSQFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPELKVN 183
           K + ++E+L+  +  T FT++++   ++ F    P+  GH    +        +P     
Sbjct: 7   KPKLSKEDLEFLKKNTNFTEEQIKEWYKGFVQDCPK--GHLTKEQFIKVYKDFFPSGSAE 64

Query: 184 PFKDRICKVFSSSNDGDCTFEDFL 255
            F + + + F + N G   F++FL
Sbjct: 65  GFCEHVFRTFDTDNSGFIDFKEFL 88


>AL117203-2|CAB55104.1|  321|Caenorhabditis elegans Hypothetical
           protein Y48C3A.3 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
 Frame = +1

Query: 7   SQFTEEELQDYEDLTYFTKKEV-------LYAHQKFKALAPEKVGHNKNAKLPMAKVLTY 165
           + FTEE  Q  E L  + K  V       +Y   KF A  P K   N+N K  +  +  +
Sbjct: 5   TNFTEEITQWVESLPNWGKAAVAGGVALAVYIPYKFMATRPRKSPLNENWKPDVVYLYQF 64

Query: 166 PELKVNPFKDRIC-KVFSSSNDGDCTFEDFLT*CQFSVR 279
           P  ++ P     C KV +     D T+E  +  C  S R
Sbjct: 65  PRARLLPNLSPFCMKVETWLRMSDITYE--IPPCSLSTR 101


>AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 135 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 331 SKSNILNACSAFTALGAISLKTDIMSRSLQRCNLHH 224
           S+S I  ACSAF     +S K+ I  R  + C +H+
Sbjct: 20  SRSQICRACSAFFRRYVLSPKSAIKCRKDKSCRIHY 55


>Z83240-3|CAB05813.2|  483|Caenorhabditis elegans Hypothetical
           protein T23H4.1 protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 596 NILISNSIYILWLFYK--SIIFIADLLSYLFGS 688
           NI      +ILWL+Y   S+I    +LS++F S
Sbjct: 302 NIFTEKIFFILWLWYTMLSLISFGSILSWIFAS 334


>Z77653-1|CAB01124.1|  218|Caenorhabditis elegans Hypothetical
           protein C13C12.1 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +3

Query: 309 AFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNV 440
           AFR+FD DG+ +I   + R     +  + ++ S+ E+ ++++ V
Sbjct: 158 AFRVFDKDGNGVITAQEFRYF---MVHMGMQFSEEEVDEMIKEV 198


>X04259-1|CAA27814.1|  161|Caenorhabditis elegans cal-1 protein.
          Length = 161

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +3

Query: 309 AFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNV 440
           AFR+FD DG+ +I   + R     +  + ++ S+ E+ ++++ V
Sbjct: 101 AFRVFDKDGNGVITAQEFRYF---MVHMGMQFSEEEVDEMIKEV 141


>AC024858-1|AAF60872.2|  196|Caenorhabditis elegans Hypothetical
           protein Y71H2AL.1 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 7   SQFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPELKVNP 186
           SQ  E EL+     +  ++  +L  + +F +LA  +        L      +  ELK NP
Sbjct: 6   SQIPEHELEHLSIESGLSRGGILKLYGRFISLATHRDKTTNEYFLTKGDFQSIAELKQNP 65

Query: 187 FKDRICKVF 213
             DRI   F
Sbjct: 66  LGDRIIDAF 74


>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 86  KNSKLWHLRKLVTIKMLNYLWPKCSHIQNLK*IHSKIG 199
           K  K  H+R L  I+ L  LW   +H  N K  ++ +G
Sbjct: 253 KEHKPHHIRSLDCIRALTILWIVFAHTYNFKFPYNNVG 290


>AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical
           protein T20H9.6 protein.
          Length = 758

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 25  ELQDYEDLTYFTKKEVLYAHQKFKA 99
           + Q +ED+ Y TKKE+L   +K  +
Sbjct: 518 DFQAFEDMKYLTKKEILELEKKMSS 542


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,611,862
Number of Sequences: 27780
Number of extensions: 317142
Number of successful extensions: 1010
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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