Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20909
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 258 CQEVFKGAISIITGTEHLTYPIFEWIHFKFWIC 160
           C  VF   I      ++LTY    W H   W+C
Sbjct: 503 CVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 258 CQEVFKGAISIITGTEHLTYPIFEWIHFKFWIC 160
           C  VF   I      ++LTY    W H   W+C
Sbjct: 556 CVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLC 588


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 644 SIIFIADLLSYLFGSCCII 700
           +II+   L+  L G+CC+I
Sbjct: 61  AIIYSMLLIMSLVGNCCVI 79


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 138 ITYGQSAHISRT 173
           +TYGQ+ HIS T
Sbjct: 64  LTYGQTNHISLT 75


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 138 ITYGQSAHISRT 173
           +TYGQ+ HIS T
Sbjct: 102 LTYGQTNHISLT 113


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 644 SIIFIADLLSYLFGSCCII 700
           +II+   L+  L G+CC+I
Sbjct: 61  AIIYSMLLIMSLVGNCCVI 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,987
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)