Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20908
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   6.3  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    26   6.3  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   6.3  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   8.4  

>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +1

Query: 22  YDSVENIMERVLLKLSVSYKHIFICGDFNINLLENTNATIRFRTLLKSYNLSNLFSEPT* 201
           YD V  +++   + L+ S       G FN+  + N++A +   T L S+N+    S P+ 
Sbjct: 346 YDLVFKVVDHDKMSLNDS----IAVGSFNVQSIINSSAQVDPETGLYSFNIET--SSPSQ 399

Query: 202 KTSTSA 219
            TS+ A
Sbjct: 400 DTSSKA 405


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 586 IMKNHKIIISHFYEYVCKYSKLFKKSLYIGQVIALR 693
           + K HK + S F ++V KY  L +     G ++ L+
Sbjct: 350 VRKQHKALTSRFDDFVAKYPNLIRGYAGRGLLLGLQ 385


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 353 LPFVPINIRRMEKL*GKVLAKISNVVMKNVYYMDLFNCIKSE 478
           L +VP  + ++    G V  +I ++ ++  Y M L NCI ++
Sbjct: 604 LVYVPSVLEKIYSSVGYVTQRIEDIELRISYLMRLLNCILAQ 645


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -2

Query: 693 PKCNDLANVQ-TFFKQLGIFTDILIKMTYYDFMIF--HDKHHISLPNFVNSNSRPF 535
           P  ND++N Q    + +     I  +++  D  I   HD  HI LPN  N+N   F
Sbjct: 32  PNSNDVSNSQRNHHRHMFPLARIRSELSEQDSSISFTHDPLHIPLPNPSNNNDNIF 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,986
Number of Sequences: 5004
Number of extensions: 56671
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)