Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20908
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    30   1.9  
AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +1

Query: 61  KLSVSYKHIFICGDFNINLLENTNATIRFRTLLKSYNLSNLFS 189
           +LSV +  IF+ G F  NLL+ T A  RF  L+ ++N  N+F+
Sbjct: 81  RLSVFFGFIFLSGWFMENLLQPTMAINRF--LVITFNNHNIFT 121


>AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical
           protein T05G11.2 protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 351 FLELLTSVTDLNLKDNIVHCGLNLND**CIYVRFYICENIIYTGCRCASFSCGL 190
           F +     + + +  +I+ CGL +N     YV F  C N+I T  +C+SF C +
Sbjct: 116 FYKYRCKTSTIMIYTSILICGL-INQ----YVLFGYCGNVIDTPLQCSSFFCAI 164


>AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical
           protein T10B11.4 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 626 SMSVNIPSCLKKVCTLAKSLHLGNLIKNAP 715
           S S  IP C+K++C+  KS+ L ++I +AP
Sbjct: 52  SSSPLIPKCIKEICSSPKSIEL-HVIYDAP 80


>Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical
           protein F54B8.10 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 261 YVRFYICENIIYTGCRCASFSCGL 190
           Y+ F  CEN+I     C +FSC +
Sbjct: 141 YILFGYCENVIDVPLECDTFSCSV 164


>Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 4   RPPNPLYDSVENIMERVLLKLSVSYK--HIFICGD 102
           +PP P   +V+N++ ++ L  SVS K   I  CGD
Sbjct: 467 QPPKPKSAAVQNLISQLQLPASVSAKVDKIIACGD 501


>Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 4   RPPNPLYDSVENIMERVLLKLSVSYK--HIFICGD 102
           +PP P   +V+N++ ++ L  SVS K   I  CGD
Sbjct: 467 QPPKPKSAAVQNLISQLQLPASVSAKVDKIIACGD 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,367,547
Number of Sequences: 27780
Number of extensions: 301129
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)