Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20907
         (560 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P15500 Cluster: Juvenile hormone-binding protein precur...    37   0.37 
UniRef50_UPI0000F20682 Cluster: PREDICTED: similar to latent TGF...    34   2.6  
UniRef50_A6SRP4 Cluster: Predicted protein; n=1; Botryotinia fuc...    33   6.0  

>UniRef50_P15500 Cluster: Juvenile hormone-binding protein
           precursor; n=11; Obtectomera|Rep: Juvenile
           hormone-binding protein precursor - Manduca sexta
           (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 229

 Score = 36.7 bits (81), Expect = 0.37
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 123 FPPCRADDIDCLRRGLRTFFNLMDSG--HYGMTPVDPIYINSVAIA 254
           F PC   DI CL R  + F      G   Y + P+DP+ I+S+ +A
Sbjct: 9   FEPCSTQDIACLSRATQQFLEKACRGVPEYDIRPIDPLIISSLDVA 54


>UniRef50_UPI0000F20682 Cluster: PREDICTED: similar to latent
           TGF-beta binding protein-2, partial; n=1; Danio
           rerio|Rep: PREDICTED: similar to latent TGF-beta binding
           protein-2, partial - Danio rerio
          Length = 227

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = +2

Query: 23  CSKRS-CNELYIFMCRTKFIREKA*SKHYNNTYSLSAMSGR*HRLPAAWFENILQPHGFR 199
           C  R+ C  L +  CR  F   +   +H N T +LS+ +      PAA     + P   R
Sbjct: 16  CHNRAVCGLLNVCQCRPGFHGHRC--EHVNVTEALSSWTETHTSAPAALSFTTVTPDLSR 73

Query: 200 SLRNDARGP-DLHKQCRHRVPEQQLSFLLRKVIVTGISWTKLVD 328
           S   DAR    LH Q   R+ E Q S LL++ + +G++  K+ +
Sbjct: 74  SANTDARKTYSLHWQ-PPRLKESQ-SVLLKRALSSGMAGQKITN 115


>UniRef50_A6SRP4 Cluster: Predicted protein; n=1; Botryotinia
           fuckeliana B05.10|Rep: Predicted protein - Botryotinia
           fuckeliana B05.10
          Length = 450

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129 PCRADDIDCLRRGLRTFFNL-MDSGHYGMTPVDPIY 233
           PC +DD+DC R+  + ++ +  ++ HY +   + IY
Sbjct: 292 PCASDDLDCWRKKFQAWYQISQENEHYNIAATNAIY 327


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,947,494
Number of Sequences: 1657284
Number of extensions: 13300899
Number of successful extensions: 31160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31153
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)