Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20907
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.62 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.5  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   4.4  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   4.4  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 558  VSDCDTLLSQRNVILVIFFFP-TSHEYVMLV*TPWMSMVICANKGSYISAFAMTRSPVTC 382
            +SDCD L+    V++V   FP    ++  LV    ++  I     SYI  F +T S    
Sbjct: 4303 ISDCDLLIIDERVLVVFILFPEPDAKFPYLV----LNEEIIRMLKSYIKKFRLTLSSAMV 4358

Query: 381  KSLLKSTPFL 352
              +L    +L
Sbjct: 4359 PDILVPVSYL 4368


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 104 YNNTYSLSAMSGR*HRLPAAWFENILQPHGFRSLRNDA 217
           Y+N Y L+  SG      A++F N LQ H +R    D+
Sbjct: 160 YDNVYMLTVGSG------ASYFHNCLQAHNWRKYSEDS 191


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 409 ESGYIRTLIRTYDHGHPGCSN*HNVFVGCWKKK 507
           E  +I+  +  Y HG+ G    HNV   C  +K
Sbjct: 63  EKTHIQNSLDLYSHGNSGSQKTHNVSFSCEIRK 95


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 396 SPVTCKSLLKSTPFLIPFSWNLLSTSLVQLIPVTMTFLNK 277
           SP++ K+  K+    + F WN L TSL+ L    +   NK
Sbjct: 205 SPLSQKTFFKADK--VQFKWNALGTSLLVLTQTEVDKSNK 242


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 306 SVGPNWSIKDSMKTELKMEYSLVATC 383
           S G N+ I+  ++TEL M + +VA C
Sbjct: 368 STGFNFKIQKRVETELDMFWYIVANC 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,397
Number of Sequences: 5004
Number of extensions: 57543
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)