Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20907
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical pr...    25   1.6  
AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    29   3.0  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    29   3.0  
U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical p...    28   5.3  
AL132852-1|CAB60435.1|  144|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical
           protein F09A5.2 protein.
          Length = 894

 Score = 25.4 bits (53), Expect(2) = 1.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 522 VILVIFFFPTSHEYVMLV*TPWMSMVICANKGSYISAFAMTR 397
           +I+V+F F TSHE  +       S       G  +  +  TR
Sbjct: 55  IIIVVFIFATSHEQALSTTGDLTSSTQSTTHGGVVFTYPTTR 96



 Score = 22.6 bits (46), Expect(2) = 1.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 384 CKSLLKSTPFLIPFSWNLLSTSLVQLIPVTMTFLNKKDSCCSG 256
           CK+ L +   ++ +S +++S       P  + F+NK    CSG
Sbjct: 135 CKTWLMTNAVILKYSDDVVSNC-----PSILEFVNKTSLSCSG 172


>AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical
           protein F13A2.6 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 543 TLLSQRNVILVIFFFPTSHEYVMLV*TPWMSMVI 442
           TLLSQ +++L+IF FP     + LV  P + M++
Sbjct: 9   TLLSQHSIMLLIFLFPL---IIALVTAPTVKMIV 39


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 421 YIRFRHD*ISGYMQVATKEYSIFNSVFMESFIDQF 317
           +I+FR D ++G M+  +    + NS+  ES IDQF
Sbjct: 112 FIKFRADRLNGCMEFVSNAREVLNSI--ESEIDQF 144


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 421 YIRFRHD*ISGYMQVATKEYSIFNSVFMESFIDQF 317
           +I+FR D ++G M+  +    + NS+  ES IDQF
Sbjct: 146 FIKFRADRLNGCMEFVSNAREVLNSI--ESEIDQF 178


>U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical
           protein C33G8.5 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 59  MCRTKFIREKA*SKHYNNTYSL 124
           MC T  + E+A + HYN+TY +
Sbjct: 111 MCSTSLVIERAIALHYNSTYEM 132


>U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical
           protein F09E5.2 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 75  LLERRREVSTTTTPIPF--PPCRADDIDCLRRGLRTFFNLMDSGHYGMTPVDPIYINSVA 248
           L+E  +++      I F   P     ++ +RR  R      D  H+G+ PV+ +Y+ +  
Sbjct: 268 LVEHMKKLELPADQIVFLHSPSDTQKVNLIRRS-RAVLYTPDREHFGIVPVEAMYLGTPV 326

Query: 249 IA 254
           IA
Sbjct: 327 IA 328


>AL132852-1|CAB60435.1|  144|Caenorhabditis elegans Hypothetical
           protein Y95D11A.1 protein.
          Length = 144

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 402 SWRKRIYTNPYSHI 443
           SWRK IYT P+ H+
Sbjct: 53  SWRKPIYTAPHQHV 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,783
Number of Sequences: 27780
Number of extensions: 316845
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)