Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20906
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 98 8e-22
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 29 0.44
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 28 1.3
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 27 1.8
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 27 3.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.1
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 4.1
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 5.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 7.1
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 7.1
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 7.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.4
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 98.3 bits (234), Expect = 8e-22
Identities = 43/95 (45%), Positives = 66/95 (69%)
Frame = +1
Query: 259 ILTALKEHPDAWTRVDTILEYSQNQETKYYALQILEQVILTRWKILPRNQCEGIKKYIVG 438
+LT + HPDAW++ +ILE S+ +TKY AL +L+++I TRWK+LP+ Q GI+ YIV
Sbjct: 37 VLTQFQAHPDAWSQAYSILEKSEYPQTKYIALSVLDKLITTRWKMLPKEQRLGIRNYIVA 96
Query: 439 LIIKNSSDPVTMESNKVYLKKLNRSLFKF*KENGP 543
++IKNSSD ++ K +L KL+ +L + K+ P
Sbjct: 97 VMIKNSSDETVLQQQKTFLNKLDLTLVQILKQEWP 131
Score = 72.5 bits (170), Expect = 5e-14
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +3
Query: 477 KQQSLFEKTKQILIQVLKREWPHNWETFISDIVGASKTNESLCXNNMEIFKLLSE 641
+Q++ K L+Q+LK+EWPHNW FI +IV ASKTN SLC NNM + +LLSE
Sbjct: 110 QQKTFLNKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLLSE 164
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 161 LLDFNQKLDINLLDNIVGCLYSAVGDQQRVAR 256
+L F+++LD+ LLD +V Y VG +Q+ A+
Sbjct: 4 ILAFDRELDVALLDRVVQTFYQGVGAEQQQAQ 35
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 57 MWINQNNFDFG--KKGTN*LNKYILPEW 134
M+IN N FDFG +K + +N ILP W
Sbjct: 2081 MFINGNGFDFGSRQKESTPINDVILPPW 2108
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 456 IRSCYDGKQQSLFEKTKQILIQVLKREWPHN-WETFISDIVGASKTNESLCXNNMEIFKL 632
++ CY K S + T+QI I + K E + + T +S + A+ +NE N E++K
Sbjct: 1372 MQQCYQRKTFSFVDCTRQITIYLAKTELLSDLYSTLLSFVCPANVSNE-----NQEVYKF 1426
Query: 633 LSE 641
E
Sbjct: 1427 SLE 1429
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 253 SDILTALKEHPDAWTRVDTILEYSQNQETKYYALQILEQVILTR--WKILPRNQCEGIKK 426
S + + H D + + T+L S+N TK +L++L +++L R ++ R
Sbjct: 193 SQVAEFISYHFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLNRANRSVMTRYISSAENL 252
Query: 427 YIVGLIIKNSSDPVTMESNKVY 492
++ +++++ S + E+ V+
Sbjct: 253 KLMMILLRDKSKNIQFEAFHVF 274
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 642 LHSTT*IFPYCXDRDFHSSLRHPQCH**KFPN 547
L+ TT + P+ DR+ H + HP+ + FP+
Sbjct: 254 LNETTFVEPFSIDRESHRVITHPRVYPKIFPH 285
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 469 TMESNKVYLKKLNRSLFKF*KENGPIIGKLLSVTLWVPQRRM 594
T E N + K +N ++F F G + K++ ++W Q+R+
Sbjct: 1817 TFEGN-LTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRL 1857
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 226 CCWGSTTCCSDILTALKEHPDAWTRVDTILEYS 324
C G+ C +DIL K D W +V E S
Sbjct: 76 CILGTFNCSADILPGDKYEIDCWIKVQQSTELS 108
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 342 ILCITNIRTSNTNEMENITKKSV*GYKKIY 431
ILCI+N R T E + K+ YKK++
Sbjct: 788 ILCISNGRIVETGTHEELIKRDGGAYKKMW 817
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -3
Query: 311 IVSTRVQASGCSFKAVSISEQHVVDPQQQN 222
+V + S + K S +E+H++DP+++N
Sbjct: 594 VVVPSLTGSDVNTKDSSFAERHIIDPEKRN 623
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 83 FWKKGNKLTK*IYFTRMATLEQQASKLLDFNQ 178
FW+KG++ + + + A L QQ L F+Q
Sbjct: 277 FWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQ 308
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 418 IKKYIVGLIIKNSSDPVTME---SNKVYLKKLNRSLFKF*KEN 537
+KKY L + +S P+ +N+ Y K + L+++ KEN
Sbjct: 31 LKKYSESLCLPKTSFPIKPNVKGNNEKYFKSITSDLYEWQKEN 73
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 486 SLFEKTKQ--ILIQVLKREWPHNWETFISDIVGASKTNESLCXNNMEIFK 629
SL EK +Q + + +++ WE +I +V +++T + + E+F+
Sbjct: 3 SLPEKDQQGEVSVSENQKKLSEEWEPYIDKLVASNRTRDERVESIQELFQ 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,248
Number of Sequences: 5004
Number of extensions: 52532
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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