Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20906
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0492 - 29769252-29769330,29769432-29769508,29769604-297697...    31   0.60 
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    27   9.7  

>01_06_0492 -
           29769252-29769330,29769432-29769508,29769604-29769761,
           29769879-29769964,29770058-29770085,29771223-29771730
          Length = 311

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
 Frame = +1

Query: 346 YALQILEQVILTRWKILPRNQCEGIKKYIVGLIIK-------NSSDPVTMESNKVYLKKL 504
           Y   IL  + +  WK+    QC GI K++    I        +++DP  M    +Y   L
Sbjct: 18  YVAMILAYLSIKWWKLFTPEQCSGINKFVAKFSIPLLSFQVISTTDPYDMNIKLIYSDIL 77

Query: 505 NRSL 516
            +SL
Sbjct: 78  QKSL 81


>01_01_0953 -
           7472173-7472178,7472216-7472311,7472370-7472462,
           7472855-7473019,7473689-7474821,7474902-7475426,
           7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +3

Query: 480 QQSLFEKTKQILIQVLKREWPHNWETFISDIVGASKTNESLCXNNMEIFKLL 635
           + SLF   ++IL++ +   WP+ ++ F + +V  S+    L  N M++F +L
Sbjct: 653 EASLFPVLQRILVEDISEFWPYAFQIF-AQLVNLSR--PPLSQNYMQLFGVL 701


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,036,712
Number of Sequences: 37544
Number of extensions: 270539
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)