Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20906
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)                     38   0.005
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_23884| Best HMM Match : IBN_N (HMM E-Value=0.092)                   29   4.3  
SB_22221| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)                 28   7.5  
SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)                 27   9.9  
SB_42810| Best HMM Match : Beach (HMM E-Value=0)                       27   9.9  
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)
          Length = 746

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 489 LFEKTKQILIQVLKREWPHNWETFISDIVG 578
           L E   +++ +V KREWP +WE F+SD+ G
Sbjct: 133 LKESLARLVAEVAKREWPQSWENFLSDLNG 162


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 468 YDGKQQSLFEKTKQILIQVLKREWPHNWETFISDIVGASKTNESLCXNN 614
           Y G  Q + +   QI     K++W   ++TF S +V  + +  + C NN
Sbjct: 29  YQGVLQQILKLVSQIKDPARKQKWQQRFQTFESVLVWTAGSRRTRCENN 77


>SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 313 LEYSQNQETKYYALQILEQVILTRWKILPR 402
           L Y  + ET +Y L+ ++ V    WK+LP+
Sbjct: 483 LPYFMDDETVHYVLEAVDMVATHGWKLLPQ 512


>SB_23884| Best HMM Match : IBN_N (HMM E-Value=0.092)
          Length = 230

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 8/47 (17%), Positives = 25/47 (53%)
 Frame = +1

Query: 310 ILEYSQNQETKYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIK 450
           ILE S+N    + +   +++ +L  W +L     + ++ +++  +++
Sbjct: 95  ILEQSKNDYVMFQSATAIKEAVLREWTLLEHTVVDSLRSFLLNFVLQ 141


>SB_22221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 418 IKKYIVGLIIKNSSDPVTMESNKVYLKKLNRSLFKF*KENGP 543
           IK +I+  I++N    + +  +  Y+KK+N S+F F   N P
Sbjct: 296 IKSFILPKILRNL---IPLSKSPDYIKKINTSIFNFLWSNKP 334


>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 495 EKTKQILIQVLKREWPHNWETFISDIVGASKTNESLCXNNMEIFK 629
           EKTK  +  VLK+E  +N E+  S ++  SKT   L   N+ I K
Sbjct: 357 EKTKGYVYNVLKKEISNNSESDYS-VINRSKTIPLLEKGNLHITK 400


>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 247  CCSDILTALKEHPDAWTRVDTILEYSQNQETKYYALQILEQVILTRWKILPRNQCEGIKK 426
            C +D++   KE PD  + V  + +   + E   + ++  ++V    W+    + CEG+ K
Sbjct: 1242 CFNDLIAFYKEDPDIKSNVPLLFK---DDEAVGHGVR--DEVYSVFWESFCSSYCEGVSK 1296

Query: 427  Y 429
            Y
Sbjct: 1297 Y 1297


>SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)
          Length = 298

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 234 PTAEYKQPTMLSNKLMSNF*LKSKSLDACCS--KVAILVKYIYLV 106
           PT E   P++  N+L S   LKS+++ +  S  K+A  VK +Y+V
Sbjct: 18  PTREAILPSIRKNRLASVLALKSRAIRSTVSIFKMAFSVKALYVV 62


>SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)
          Length = 868

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = +1

Query: 256 DILTALKEHPDAWTRVDTILEYS------QNQETKYYALQILEQVILTRWKILPRNQCEG 417
           D ++A+K++      ++ IL +        + E + + L  L  V++   K+L RN+ E 
Sbjct: 647 DSMSAIKQYFQEKPNLNQILNWCVFDCDLDDDEVREHVLDTLVDVVVLLMKVLRRNEFEA 706

Query: 418 IKKYIVGLIIKNSSDPVT 471
           +   I  L  +N +  VT
Sbjct: 707 LFSRIYHLSSRNKARAVT 724


>SB_42810| Best HMM Match : Beach (HMM E-Value=0)
          Length = 667

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 66  NQNNFDFG-KKGTN*LNKYILPEW 134
           NQNNFD G K+    L+  ILP W
Sbjct: 45  NQNNFDLGAKQNGERLDHVILPPW 68


>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +3

Query: 498 KTKQILIQVLKREWPHNWETFISDIV 575
           K  ++++ + + +WPH +  F+SDI+
Sbjct: 98  KLAKVIVDMGRLDWPHFYPNFLSDIM 123


>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 107 LICSLFSKIKIILINPHSFLTLYNTEKIIC 18
           L+ +L   +K++L NP++ +T YN   + C
Sbjct: 169 LLHNLLELLKLVLENPNNKMTAYNLAVVFC 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,234,168
Number of Sequences: 59808
Number of extensions: 338336
Number of successful extensions: 784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)