Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20906
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...    99   3e-21
AL117202-19|CAB57899.1|  209|Caenorhabditis elegans Hypothetical...    28   5.0  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 49/97 (50%), Positives = 67/97 (69%)
 Frame = +1

Query: 253 SDILTALKEHPDAWTRVDTILEYSQNQETKYYALQILEQVILTRWKILPRNQCEGIKKYI 432
           + IL +LKE  D+WT+VD IL+YSQ  E+KY+ALQILE VI  +WK LP+ Q EGIK YI
Sbjct: 46  NQILMSLKEERDSWTKVDAILQYSQLNESKYFALQILETVIQHKWKSLPQVQREGIKSYI 105

Query: 433 VGLIIKNSSDPVTMESNKVYLKKLNRSLFKF*KENGP 543
           +  + + SSD   ME +++ L KLN  L +  K++ P
Sbjct: 106 ITKMFELSSDQSVMEQSQLLLHKLNLVLVQIVKQDWP 142



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 28/55 (50%), Positives = 39/55 (70%)
 Frame = +3

Query: 477 KQQSLFEKTKQILIQVLKREWPHNWETFISDIVGASKTNESLCXNNMEIFKLLSE 641
           + Q L  K   +L+Q++K++WP  W TFI+DIV +SK NE++C NNM I  LLSE
Sbjct: 121 QSQLLLHKLNLVLVQIVKQDWPKAWPTFITDIVDSSKNNETVCINNMNILSLLSE 175


>AL117202-19|CAB57899.1|  209|Caenorhabditis elegans Hypothetical
           protein Y47D3A.25 protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 382 RWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESN-KVYLKKLNRSLFK 522
           RW     N C+ ++K +VG   + +   V +ES+ + Y + +N S F+
Sbjct: 103 RWLQEIENNCDSVQKVLVGNKCEENERRVVLESDARNYAQSMNISFFE 150


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 115  NIFYQNGNLRTTGI*TFGFQSKIGHQFIGQ 204
            +I YQ GN  T G+   GF    G+QF G+
Sbjct: 1382 HIPYQGGNFNTRGVSRGGFSYTSGNQFRGR 1411


>U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical
           protein C06A8.6 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 83  FWKKGNKLTK*IYFTRMATLEQQASKLLDFN 175
           FW +GNKL        +  L Q  S  LDFN
Sbjct: 257 FWARGNKLDNWSIMDELVELPQLNSVYLDFN 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,118,388
Number of Sequences: 27780
Number of extensions: 282276
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)