Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20906
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   4.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.9  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 415 GIKKYIVGLIIKNSSDPVTMESNKVYLKKLNRSLFKF*KENGPIIGKLLSVTLWVPQRRM 594
           G+K+ IVG+   +S++P   E+    +KK   S  K    N P     + ++ W     +
Sbjct: 71  GVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYN-PAAVAFVPISGWHGDNML 129

Query: 595 KVSVXTIW 618
           +VS    W
Sbjct: 130 EVSSKMPW 137


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 415 GIKKYIVGLIIKNSSDPVTMESNKVYLKKLNRSLFKF*KENGPIIGKLLSVTLWVPQRRM 594
           G+K+ IVG+   +S++P   E+    +KK   S  K    N P     + ++ W     +
Sbjct: 87  GVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYN-PAAVAFVPISGWHGDNML 145

Query: 595 KVSVXTIW 618
           +VS    W
Sbjct: 146 EVSSKMPW 153


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 415 GIKKYIVGLIIKNSSDPVTMESNKVYLKKLNRSLFKF*KENGPIIGKLLSVTLWVPQRRM 594
           G+K+ IVG+   +S++P   E+    +KK   S  K    N P     + ++ W     +
Sbjct: 144 GVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYN-PAAVAFVPISGWHGDNML 202

Query: 595 KVSVXTIW 618
           +VS    W
Sbjct: 203 EVSSKMPW 210


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 322 NIQVLYQHESKHQDVPSKQSVYPS 251
           +I VLY+ ++K+   P+   +YP+
Sbjct: 145 SIAVLYRPDTKYMKFPAIYEIYPN 168


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 322 NIQVLYQHESKHQDVPSKQSVYPS 251
           +I VLY+ ++K+   P+   +YP+
Sbjct: 145 SIAVLYRPDTKYMKFPAIYEIYPN 168


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +1

Query: 415 GIKKYIVGLIIKNSSDPVTMESNKVYLKKLNRSLFKF*KENGPIIGKLLSVTLWVPQRRM 594
           G+K+ IVG+   + +DP   E+    +KK   S  K    N   +   + ++ W     +
Sbjct: 144 GVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVA-FVPISGWHGDNML 202

Query: 595 KVSVXTIW 618
           + S  T W
Sbjct: 203 EPSPKTPW 210


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 360 YL*CIIFSFLILRIFKYCINTSPSIR 283
           Y+ CII  FL   IFK   N +   R
Sbjct: 353 YIPCIIMVFLYYNIFKALRNRARKAR 378


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 334 LDFENIQVLYQ 302
           +D+EN+Q LYQ
Sbjct: 302 IDYENVQSLYQ 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,170
Number of Sequences: 438
Number of extensions: 3418
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)