Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20906
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03110.1 68416.m00307 exportin 1, putative strong similarity ...    79   3e-15
At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex...    77   8e-15
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi...    34   0.094
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p...    28   4.7  
At5g63190.2 68418.m07934 MA3 domain-containing protein low simil...    28   6.1  
At5g63190.1 68418.m07933 MA3 domain-containing protein low simil...    28   6.1  

>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1076

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 38/96 (39%), Positives = 59/96 (61%)
 Frame = +1

Query: 256 DILTALKEHPDAWTRVDTILEYSQNQETKYYALQILEQVILTRWKILPRNQCEGIKKYIV 435
           +IL  LK +PD W +V  IL+ + +  TK++ALQ+LE VI  RW  LP  Q +G+K YI 
Sbjct: 39  NILRDLKANPDTWLQVVHILQNTSSTHTKFFALQVLEGVIKYRWNALPVEQRDGMKNYIS 98

Query: 436 GLIIKNSSDPVTMESNKVYLKKLNRSLFKF*KENGP 543
            +I++ S D  +  + ++Y+ KLN  L +  K+  P
Sbjct: 99  DVIVQLSRDEASFRTERLYVNKLNIILVQIVKQEWP 134



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/48 (54%), Positives = 37/48 (77%)
 Frame = +3

Query: 498 KTKQILIQVLKREWPHNWETFISDIVGASKTNESLCXNNMEIFKLLSE 641
           K   IL+Q++K+EWP  W++FI D+V A+KT+E++C N M I KLLSE
Sbjct: 120 KLNIILVQIVKQEWPAKWKSFIPDLVIAAKTSETICENCMAILKLLSE 167


>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510
          Length = 1075

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 38/95 (40%), Positives = 60/95 (63%)
 Frame = +1

Query: 259 ILTALKEHPDAWTRVDTILEYSQNQETKYYALQILEQVILTRWKILPRNQCEGIKKYIVG 438
           IL  L+ +PD W +V  IL+ + + +TK++ALQ+LE VI  RW  LP  Q +G+K YI  
Sbjct: 40  ILRDLQANPDMWLQVVHILQNTNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISE 99

Query: 439 LIIKNSSDPVTMESNKVYLKKLNRSLFKF*KENGP 543
           +I++ SS+  +  S ++Y+ KLN  L +  K + P
Sbjct: 100 VIVQLSSNEASFRSERLYVNKLNVILVQIVKHDWP 134



 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +3

Query: 498 KTKQILIQVLKREWPHNWETFISDIVGASKTNESLCXNNMEIFKLLSE 641
           K   IL+Q++K +WP  W +FI D+V A+KT+E++C N M I KLLSE
Sbjct: 120 KLNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCMAILKLLSE 167


>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
           to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00240: Ubiquitin family, PF00632: HECT-domain
           (ubiquitin-transferase)
          Length = 873

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +1

Query: 277 EHPDAWTRVDTILEYSQNQETKYYALQI-LEQVILTRWKILPRNQCEGIKKYIVGLIIKN 453
           EHP AW  +D I+ Y+ ++  K   LQ  + + I+T + ++P    E I KY+   I  N
Sbjct: 172 EHPVAWQTIDDIM-YTISRMYKGENLQSNINEKIVTFFAMIPVESDESIAKYL--NIFSN 228

Query: 454 SSDPVTMESNKVYLKKLNRS 513
           SS P  +    +Y   L R+
Sbjct: 229 SSVPAALV--MLYASSLERN 246


>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
           putative / heterogeneous nuclear ribonucleoprotein,
           putative similar to Polypyrimidine tract-binding protein
           1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
           (hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
           sapiens} SP|P26599; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 429

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 451 NSSDPVTMESNKVYLKKLNRSLFKF*KENGPIIGKLLSVTLWVPQRRMKVSVXTI 615
           +SS+P  +    VYL+  NR      K    ++G +L VT+     RM VS+  +
Sbjct: 77  SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGDDARM-VSIDVL 130


>At5g63190.2 68418.m07934 MA3 domain-containing protein low
           similarity to programmed cell death 4 protein [Gallus
           gallus] GI:12958564; contains Pfam profile PF02847: MA3
           domain
          Length = 702

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 420 KKIYSWPYH*KFIRSCYDGKQQSLFEKTKQILIQVLKREWPHNWETF 560
           K   S P+H + +   + G   +  E+TK+ + ++LK E+  N +T+
Sbjct: 260 KSYLSAPHHAELVEKKWGGSTHTTVEETKKKISEILK-EYVENGDTY 305


>At5g63190.1 68418.m07933 MA3 domain-containing protein low
           similarity to programmed cell death 4 protein [Gallus
           gallus] GI:12958564; contains Pfam profile PF02847: MA3
           domain
          Length = 702

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 420 KKIYSWPYH*KFIRSCYDGKQQSLFEKTKQILIQVLKREWPHNWETF 560
           K   S P+H + +   + G   +  E+TK+ + ++LK E+  N +T+
Sbjct: 260 KSYLSAPHHAELVEKKWGGSTHTTVEETKKKISEILK-EYVENGDTY 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,989,875
Number of Sequences: 28952
Number of extensions: 249060
Number of successful extensions: 508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)