Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20905
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom...    33   0.037
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    30   0.26 
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    29   0.46 
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    29   0.46 
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    29   0.46 
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    29   0.46 
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    29   0.46 
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    29   0.81 
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    28   1.4  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    27   2.5  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    27   3.3  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   4.3  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    25   7.5  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   9.9  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   9.9  

>SPBC800.12c |||ubiquitin family protein,
           unknown|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 142 EIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGK 240
           EI   + I  LKEVL+S+ ST+P  + L++ GK
Sbjct: 75  EINVQSTILELKEVLASQLSTQPSSIRLMYKGK 107


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 136 QVEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +++I+ +  + R+KE +  K    P Q  LI+AGK M D
Sbjct: 14  ELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMAD 52


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +E+E    I  +K  +  K    P+Q  LIFAGK + D
Sbjct: 15  LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 52


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +E+E    I  +K  +  K    P+Q  LIFAGK + D
Sbjct: 15  LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 52


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +E+E    I  +K  +  K    P+Q  LIFAGK + D
Sbjct: 15  LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 52


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +E+E    I  +K  +  K    P+Q  LIFAGK + D
Sbjct: 15  LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 52



 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +E+E    I  +K  +  K    P+Q  LIFAGK + D
Sbjct: 91  LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 128



 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +E+E    I  +K  +  K    P+Q  LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 204



 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +E+E    I  +K  +  K    P+Q  LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 280



 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +E+E    I  +K  +  K    P+Q  LIFAGK + D
Sbjct: 319 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 356


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           +E+E    I  +K  +  K    P+Q  LIFAGK + D
Sbjct: 15  LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 52


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           V ++ ++ +  LKE ++     E E+  LI+AG+++ D
Sbjct: 18  VTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKD 55


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 142 EIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
           ++  D  I  LKE + ++ + E E+  LI++G+I+ D
Sbjct: 17  DVSADTKISELKEKIQTQQNYEVERQKLIYSGRILAD 53


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 606 WISR-HEILHLWVGGDEL 556
           WIS  H +LH+W  G+EL
Sbjct: 619 WISEAHTLLHIWYNGNEL 636


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -1

Query: 603 ISRHEILHLWVGGDELRIFSGSFIICCTNGLSR 505
           ++ +++LH     + L+ + G FIIC ++G+ +
Sbjct: 396 MTTNDVLHTLQALNMLKYYKGQFIICISDGIEQ 428


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 142 EIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMNDAIP 261
           ++     +  LKE+++  F    ++L LI AG+++ +  P
Sbjct: 19  QVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETP 58


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 512 NPLVQQMMNDPENMRSSSPPTHKCK 586
           NP V++M+ DP    S  P  H C+
Sbjct: 146 NPFVREMLEDPLLHASLVPYIHSCR 170


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = +1

Query: 568 SNPQMQDLMSRNPEISHMLNNPELLRQTMELARNP 672
           S+P+  + ++ NPE + +L +   + +  ++ +NP
Sbjct: 138 SDPKFMEKLASNPETASLLADSAFMAKLQKIQQNP 172


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 545 ENMRSSSPPTHKCKISCLEIQKS 613
           ++M +S  P H  +ISCL I K+
Sbjct: 164 DHMNTSIVPAHDSEISCLGISKT 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,504
Number of Sequences: 5004
Number of extensions: 47886
Number of successful extensions: 124
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)