Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20905
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 29 2.6
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 29 2.6
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 29 2.6
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 29 3.4
SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2) 29 4.5
SB_46571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 52
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 91 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 167 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 319 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 395 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 471 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 91 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 167 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 319 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 93 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 130
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I+ +K + K P+Q LIFAGK + D
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 52
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 136 QVEIEEDADIKRLKEVLSS---KFSTEPEQLCLIFAGKIMNDAIP 261
+VEI ED + +LK+ + + K + + LI+AGKI+ND P
Sbjct: 80 KVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNP 124
>SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)
Length = 376
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 464 HSSLEIHKSTLTKA-QAFKTRQPTQRV*TKWC 372
HS+ +I + ++T A + TRQPT R+ WC
Sbjct: 236 HSTTDITEISVTDALERTITRQPTSRILASWC 267
>SB_46571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 545 QDHSSSAAPMDCQDLSEHIRVGQKFLLHSSLEIHKSTLTKAQAFKTR 405
++ S+S ++ E +R Q+FL H + ST A FKT+
Sbjct: 157 EEESASCVSLNDTVSQEILRASQQFLAHDPKTLRSSTSECALGFKTK 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,583,667
Number of Sequences: 59808
Number of extensions: 363061
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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