Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20905
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 60 2e-09
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 60 2e-09
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 33 0.23
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 30 1.2
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 30 1.6
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 29 2.1
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 29 2.1
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 29 2.1
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 29 2.8
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 29 2.8
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 29 2.8
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.8
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.8
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.8
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.8
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.8
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 29 2.8
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 29 2.8
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 29 2.8
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 29 2.8
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 29 2.8
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 29 2.8
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 29 2.8
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 29 2.8
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 29 2.8
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 29 2.8
At5g25070.1 68418.m02971 expressed protein 28 6.5
At3g09660.1 68416.m01145 minichromosome maintenance family prote... 27 8.6
At2g44250.1 68415.m05506 expressed protein contains Pfam profi... 27 8.6
At1g72450.1 68414.m08378 expressed protein 27 8.6
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = +1
Query: 559 LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNP 672
+I +NPQM++L+ RNPE+ H+LN+P +LRQT+E ARNP
Sbjct: 193 MIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNP 230
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +1
Query: 559 LITSNPQMQDLMSRNPEISHMLNNPELLRQ 648
L++ NPQ++ ++ NP++ M+ NP+ LRQ
Sbjct: 410 LMSLNPQLRSMLDSNPQLREMMQNPDFLRQ 439
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/37 (32%), Positives = 27/37 (72%)
Frame = +1
Query: 559 LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARN 669
++ SNPQ++++M +NP+ ++PE+++Q M L ++
Sbjct: 420 MLDSNPQLREMM-QNPDFLRQFSSPEMMQQMMTLQQS 455
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 562 ITSNPQ-MQDLMSRNPEISHMLNNPELLRQTME 657
+ SNPQ M LMS NP++ ML++ LR+ M+
Sbjct: 400 VFSNPQYMNQLMSLNPQLRSMLDSNPQLREMMQ 432
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 562 ITSNPQMQDLMSRNPEISHMLNNPELLR 645
+ NP M M P I +++NNPE +R
Sbjct: 164 LAQNPNMIRDMMNTPAIQNLMNNPEFMR 191
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = +1
Query: 559 LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNP 672
+I +NPQM++L+ RNPE+ H+LN+P +LRQT+E ARNP
Sbjct: 188 MIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNP 225
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +1
Query: 559 LITSNPQMQDLMSRNPEISHMLNNPELLRQ 648
L++ NPQ++ ++ NP++ M+ NP+ LRQ
Sbjct: 394 LMSLNPQLRSMLDMNPQLREMMQNPDFLRQ 423
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/37 (29%), Positives = 26/37 (70%)
Frame = +1
Query: 559 LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARN 669
++ NPQ++++M +NP+ ++PE+++Q M L ++
Sbjct: 404 MLDMNPQLREMM-QNPDFLRQFSSPEMMQQMMSLQQS 439
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 562 ITSNPQ-MQDLMSRNPEISHMLNNPELLRQTME 657
+ SNPQ M LMS NP++ ML+ LR+ M+
Sbjct: 384 VLSNPQYMNQLMSLNPQLRSMLDMNPQLREMMQ 416
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 562 ITSNPQMQDLMSRNPEISHMLNNPELLR 645
+ NP M M P I +++NNPE +R
Sbjct: 159 LAQNPNMIREMMNTPAIQNLMNNPEFMR 186
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 139 VEIE-EDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMNDAIP*SNTTSKMG 288
+E+E E+ + L++ ++ + +PE + LIFAGKI+ D + T S++G
Sbjct: 14 LEVELENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKDDGDATLTLSQLG 64
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I LK + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHED 204
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK ++D
Sbjct: 93 LEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDD 130
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K +P+Q LIFAG+ + D
Sbjct: 245 LEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLED 282
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMNDAI 258
+E+E I +KE + K +P+Q LIF G+ + D +
Sbjct: 566 LEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGV 605
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 136 QVEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+++IE I R+KE + K P Q LI+AGK + D
Sbjct: 90 EIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLAD 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 136 QVEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+++IE I R+KE + K P Q LI+AGK + D
Sbjct: 90 EIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLAD 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 356
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 356
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 356
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 166 LEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLED 203
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGK 240
+E+E I +K + K P+Q LIFAGK
Sbjct: 242 LEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGK 275
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 VEIEEDADIKRLKEVLSSKFSTEPEQLCLIFAGKIMND 252
+E+E I +K + K P+Q LIFAGK + D
Sbjct: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
>At5g25070.1 68418.m02971 expressed protein
Length = 736
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 133 QQVEIEEDADIKRLKEVLSSKFSTEPEQLCLI--FAGKIMNDA 255
+Q E + DA +++EVL S+ + E E CL+ F NDA
Sbjct: 276 RQAESDCDAIESKMEEVLLSQIAAEEESACLLRSFGTDAENDA 318
>At3g09660.1 68416.m01145 minichromosome maintenance family protein
/ MCM family protein similar to SP|P49717 DNA
replication licensing factor MCM4 (CDC21 homolog) {Mus
musculus}; contains Pfam profile PF00493: MCM2/3/5
family
Length = 777
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 162 YQKTQRSVVFKIQYRTRTIMSYFRRENHE*CDTLKQHNI-KDGLTVHL 302
Y +QR + F ++++ FRR H C ++ H I K G+T+ L
Sbjct: 330 YSFSQRDLEFIVKFKEEYGSDTFRRILHSVCPSIYGHEIVKAGITLSL 377
>At2g44250.1 68415.m05506 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 409
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 270 VASGYRIIHDFPGENKT*LFWFCT 199
V SG++I+H G+N T LF F T
Sbjct: 210 VESGWQILHSMYGDNNTRLFAFWT 233
>At1g72450.1 68414.m08378 expressed protein
Length = 269
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 66 GNSRMTMYFGGKVKFIRE 13
GNS++T++FGGKV E
Sbjct: 103 GNSQLTIFFGGKVMVFNE 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,830
Number of Sequences: 28952
Number of extensions: 257851
Number of successful extensions: 779
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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