Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20904
         (631 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RBA4 Cluster: CCAAT-box DNA binding protein subunit B...    33   5.7  
UniRef50_Q7RRV4 Cluster: Putative uncharacterized protein PY0061...    33   7.5  
UniRef50_Q6LTG5 Cluster: Sensor protein; n=2; Photobacterium pro...    32   9.9  

>UniRef50_Q7RBA4 Cluster: CCAAT-box DNA binding protein subunit B;
           n=3; Plasmodium (Vinckeia)|Rep: CCAAT-box DNA binding
           protein subunit B - Plasmodium yoelii yoelii
          Length = 899

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 399 KILIKKNNASCLAEIYEIIYWIFFKILSLYKLV 301
           KIL KKNN+ C+ E  +I+Y I  K    Y L+
Sbjct: 429 KILYKKNNSECVNEFVDILYDIIIKEYVYYNLL 461


>UniRef50_Q7RRV4 Cluster: Putative uncharacterized protein PY00613;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY00613 - Plasmodium yoelii
           yoelii
          Length = 602

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -2

Query: 441 ISYDNNLDINLFVSKILIKKNNASCLAEIYEIIYWIFFKILSLYK 307
           +++DN+  IN F++  LI+K   + L  IY+ IY+    ++  +K
Sbjct: 522 MTHDNHFYINYFLNYFLIEKTEKNNLEYIYDKIYYYILIVIMCFK 566


>UniRef50_Q6LTG5 Cluster: Sensor protein; n=2; Photobacterium
           profundum|Rep: Sensor protein - Photobacterium profundum
           (Photobacterium sp. (strain SS9))
          Length = 455

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = -2

Query: 447 VKISYDNNLDINLFVSKILIKKNNASCLAEIYEIIYWIF 331
           +KIS DNN+   +F+S ++ K+ +   L ++Y +++ IF
Sbjct: 124 IKISSDNNISTPVFISVVMNKEVHQQFLNKMYTLLFSIF 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,805,004
Number of Sequences: 1657284
Number of extensions: 8883652
Number of successful extensions: 16747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16742
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)