Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20904
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.7  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   9.9  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   9.9  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   9.9  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   9.9  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   9.9  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   9.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.9  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   9.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 380 TTRPVWLKFMRLYIG 336
           TT  +WL F+ LY G
Sbjct: 856 TTCVIWLAFVPLYFG 870


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 NLKKYPIYNLINFSQ 366
           N KK   YN+IN  Q
Sbjct: 104 NYKKLQYYNIINIEQ 118


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 NLKKYPIYNLINFSQ 366
           N KK   YN+IN  Q
Sbjct: 104 NYKKLQYYNIINIEQ 118


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 NLKKYPIYNLINFSQ 366
           N KK   YN+IN  Q
Sbjct: 104 NYKKLQYYNIINIEQ 118


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 NLKKYPIYNLINFSQ 366
           N KK   YN+IN  Q
Sbjct: 104 NYKKLQYYNIINIEQ 118


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 NLKKYPIYNLINFSQ 366
           N KK   YN+IN  Q
Sbjct: 104 NYKKLQYYNIINIEQ 118


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 NLKKYPIYNLINFSQ 366
           N KK   YN+IN  Q
Sbjct: 104 NYKKLQYYNIINIEQ 118


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 NLKKYPIYNLINFSQ 366
           N KK   YN+IN  Q
Sbjct: 108 NYKKLQYYNIINIEQ 122


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 NLKKYPIYNLINFSQ 366
           N KK   YN+IN  Q
Sbjct: 104 NYKKLQYYNIINIEQ 118


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 371 PVWLKFMRLYIGYFLR 324
           P WL F+R+ +   LR
Sbjct: 49  PTWLSFIRIVLVILLR 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,592
Number of Sequences: 438
Number of extensions: 3011
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)