Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20904
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23800.1 68418.m02794 agenet domain-containing protein contai...    29   3.4  
At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not full...    27   7.8  
At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not full...    27   7.8  
At1g53050.1 68414.m06007 protein kinase family protein contains ...    27   7.8  

>At5g23800.1 68418.m02794 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 552

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 480 TESLN*SHVCHVKISYDNNLDINLFVSKILIKKNNA 373
           +ESL+ S  C V+ISY NN + +++   IL  K N+
Sbjct: 7   SESLSLSEGCEVEISYKNNGNESVWYKAILEAKPNS 42


>At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 105 SYHHMSPRHSQSRNRYRQL--LQNVPP 31
           S HH SP+H+ +R ++R    L N+PP
Sbjct: 244 SMHHGSPQHTGNRPQFRPALPLNNLPP 270


>At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 105 SYHHMSPRHSQSRNRYRQL--LQNVPP 31
           S HH SP+H+ +R ++R    L N+PP
Sbjct: 244 SMHHGSPQHTGNRPQFRPALPLNNLPP 270


>At1g53050.1 68414.m06007 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 694

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 93  MSPRHSQSRNRYRQLLQNVPPDEVVYGSPL 4
           M  R SQS NR R    N  P+EV  G P+
Sbjct: 485 MQKRQSQSTNRSRSEKFNPHPEEVASGFPI 514


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,281,502
Number of Sequences: 28952
Number of extensions: 194484
Number of successful extensions: 329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)