Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20903
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   4.0  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   7.0  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   9.3  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   9.3  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 257 CYFGSRHIVCFESLPCSICFGNHHL 183
           CY G    + F  L CS+C    HL
Sbjct: 43  CYCGKDRNLRFPDLQCSVCLNMFHL 67


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 283 IMATVTCQKVHITPRTVVSGTEKATASREDTRDAVEELLEE 405
           ++   T +K +I P+TV +  +  T S +   D   E LEE
Sbjct: 606 LIKQATSEKGNILPKTVETHMKALTTSVDKVLDQTAEALEE 646


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 349 KATASREDTRDAVEELLEEQHAVRLGLPALNTTQGDPIMLNS 474
           KAT  +   R +++++        LGLP   T  GD +M  S
Sbjct: 66  KATLKQNPERKSIKQIPGMNIDSILGLPVKTTASGDSLMQES 107


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 400 EEQHAVRLGLPALNTTQGDPIMLNS*VNT 486
           E+Q    L +  +NT QGDPI  N+ +NT
Sbjct: 40  EDQIPSNLSIDNINTPQGDPIDKNN-LNT 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,413
Number of Sequences: 5004
Number of extensions: 35398
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)