Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20903
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386...    31   0.59 
01_01_0970 + 7664552-7664570,7664696-7664733,7665661-7666510,766...    31   1.0  
10_08_0771 + 20463872-20465113                                         29   2.4  
01_06_1255 - 35769329-35769568                                         27   9.6  

>04_04_0844 -
           28637393-28638118,28638206-28638283,28638431-28638607,
           28639124-28639537
          Length = 464

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +3

Query: 24  MDRVQS*RTVATVRETPRVDTDVSVAAAEAHRTVIAAEALSLIVKAV--TAIGADKVVIT 197
           M   Q  R+ AT+ E+P  D+  +  +  +  +V  AEALS ++ AV    +       +
Sbjct: 294 MTSEQKSRSYATMPESPSKDSTTAQQSVPSPPSVGMAEALSPLLMAVDIAELCDSPQFFS 353

Query: 198 KTDRTGKAFKTDNMTATKIACERTGGDGY 284
            T R G + ++   T TK  C R+   GY
Sbjct: 354 ATSRPGSS-RSRAFTPTKSECSRSLFGGY 381


>01_01_0970 +
           7664552-7664570,7664696-7664733,7665661-7666510,
           7666608-7666699
          Length = 332

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 265 VPVATDIMATVTCQKV-HITPRTVVSGTEKATASREDTRDAVEELLEEQHAVRLGLPALN 441
           +P    I+A  T +++  + PR V SG  KA  +R    D  +    E   V  GLP L 
Sbjct: 232 LPAFDKILAGCTAKRLLALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLP 291

Query: 442 TTQGD 456
             + D
Sbjct: 292 IVEWD 296


>10_08_0771 + 20463872-20465113
          Length = 413

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 381 VPCILPGSRCLLRTAHDRSRRDVHLLTRHR 292
           V C++P + C L  AHD  RR +   TR R
Sbjct: 10  VLCLIPPTMCSLAAAHDDLRRGLEQATRGR 39


>01_06_1255 - 35769329-35769568
          Length = 79

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 240 TATKIACERTGGDGYYGNGD 299
           TA  +ACE+TGG G  G+GD
Sbjct: 45  TAAALACEKTGGGG-AGSGD 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,427
Number of Sequences: 37544
Number of extensions: 257224
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)