Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20903
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_52286| Best HMM Match : Clathrin (HMM E-Value=1.8) 29 3.2
SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09) 29 4.2
SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042) 28 5.6
SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069) 23 6.7
SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16) 28 7.4
SB_38979| Best HMM Match : I-set (HMM E-Value=0.11) 27 9.8
SB_11786| Best HMM Match : Complex1_LYR (HMM E-Value=5.6) 27 9.8
>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1652
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = -2
Query: 271 PVRSHAILVAVILSVLKAFPVRSVLVITTLSAPIAVT 161
P+RS ++ +++ L++LKA S LV TT++A + VT
Sbjct: 104 PLRSCSVAISIFLTLLKAVICLSELVYTTVAA-VTVT 139
>SB_52286| Best HMM Match : Clathrin (HMM E-Value=1.8)
Length = 446
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -2
Query: 307 SDTSPLP*YPSPPVRSHAILVAVILSVLKAFPVRSVLVITTLSAP----IAVTALTIRES 140
SDTSP PSP V + + + +L R++LV+T + P +A +L I+E+
Sbjct: 157 SDTSPGSAMPSPSVDTDLVRMEALLDSWCLDLKRNILVLTDVVKPKIIVVAYESLKIKEN 216
Query: 139 ASAAMTV 119
S +
Sbjct: 217 LSCCFEI 223
>SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)
Length = 584
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = +3
Query: 21 KMDRVQS*RTVATVRETPRVDTDVSVAAAEAHRTVIAAEALSLIVKAVTAIGADKV---- 188
K+D ++ V TVR +VDT +V + RTV + + K TA KV
Sbjct: 485 KVDTARTVFEVDTVRTVFKVDTARTVFKVDTARTVFEVDTARTVFKVDTARTVFKVDTAR 544
Query: 189 VITKTDRTGKAFKTDN-MTATKIACERT 269
+ K D F+ D T ++ RT
Sbjct: 545 TVFKVDTARTVFEVDTARTVFEVDTART 572
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = +3
Query: 21 KMDRVQS*RTVATVRETPRVDTDVSVAAAEAHRTVIAAEALSLIVKAVTAIGADKV---- 188
K+D ++ V T R +VDT +V + RTV + + K TA KV
Sbjct: 404 KVDTARTDFKVDTARTDFKVDTARTVFKVDTARTVFEVDTARTVFKVDTARTVFKVDTAP 463
Query: 189 VITKTDRTGKAFKTDN-MTATKIACERT 269
+ K D F+ D T K+ RT
Sbjct: 464 TVFKVDTARTVFEVDTARTVFKVDTART 491
Score = 28.3 bits (60), Expect = 5.6
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Frame = +3
Query: 21 KMDRVQS*RTVATVRETPRVDTDVSVAAAEAHRTVIAAEALSLIVKAVTAIGADKVVITK 200
K+D + V T R VDT +V + RTV + + + K TA KV +
Sbjct: 458 KVDTAPTVFKVDTARTVFEVDTARTVFKVDTARTVFEVDTVRTVFKVDTARTVFKVDTAR 517
Query: 201 T----DRTGKAFKTDN-MTATKIACERT 269
T D FK D T K+ RT
Sbjct: 518 TVFEVDTARTVFKVDTARTVFKVDTART 545
>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
Length = 815
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 251 FGSRHIVCFESLPCS 207
F SRH C+ES+PC+
Sbjct: 776 FASRHSTCYESVPCA 790
>SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069)
Length = 354
Score = 23.4 bits (48), Expect(2) = 6.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 273 GDGYYGNGDVSEG 311
GDG YG+GD +G
Sbjct: 314 GDGDYGDGDYGDG 326
Score = 23.0 bits (47), Expect(2) = 6.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 270 GGDGYYGNGD 299
GGDG YG+GD
Sbjct: 304 GGDGDYGDGD 313
>SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)
Length = 377
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 322 PRTVVSGTEKATASREDTRDAVEELLEEQ 408
PRT VSG +T+ + TR+ V+ L +EQ
Sbjct: 24 PRTTVSGQLTSTSVNDRTREYVQVLQDEQ 52
>SB_38979| Best HMM Match : I-set (HMM E-Value=0.11)
Length = 569
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 284 ISVATGTFACYFGSRHIVCFESLPCSI-CFGNHHLVGPD 171
+S+AT F FGSRH +C + F H +V PD
Sbjct: 27 LSLATNQFPSEFGSRHFMCRGRTRDGMDIFHQHLIVVPD 65
>SB_11786| Best HMM Match : Complex1_LYR (HMM E-Value=5.6)
Length = 656
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 284 ISVATGTFACYFGSRHIVCFESLPCSI-CFGNHHLVGPD 171
+S+AT F FGSRH +C + F H +V PD
Sbjct: 198 LSLATNQFPSEFGSRHFMCRGRTRDGMDIFHQHLIVVPD 236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,263
Number of Sequences: 59808
Number of extensions: 298351
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -