Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20903
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical
           protein C46G7.3 protein.
          Length = 715

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 248 GSRHI--VCFESLPCSICFGNHHLVG 177
           G RH   +C+ +L C+ C G HH  G
Sbjct: 655 GERHSSSMCYSTLKCTYCSGRHHPAG 680


>AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical
           protein B0524.7 protein.
          Length = 576

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 316 ITPRTVVSGTEKATASREDTRDAVEELLEEQHAVRL 423
           +T R VVSGT +++  RE+     ++LLEE   +R+
Sbjct: 303 LTMRLVVSGTNQSSIDRENLLRKTKKLLEELKNLRI 338


>Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical
           protein C25G4.4 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 280 DIMATVTCQ-KVHITPRTVVSGTEKATASREDTRDAVEELLE 402
           DI +T+  +  V   PRT  S  E    +RE T + VEEL++
Sbjct: 363 DIQSTLAEEHSVKYQPRTSSSSQESLHTAREFTEEKVEELID 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,979,774
Number of Sequences: 27780
Number of extensions: 212556
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)