Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20902
(738 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HQ04 Cluster: Transcription elongation factor B polyp... 152 8e-36
UniRef50_Q15369 Cluster: Transcription elongation factor B polyp... 121 2e-26
UniRef50_Q54Q05 Cluster: Putative uncharacterized protein; n=1; ... 63 8e-09
UniRef50_Q6CHY2 Cluster: Yarrowia lipolytica chromosome A of str... 58 2e-07
UniRef50_Q23153 Cluster: Elongin c protein 2; n=1; Caenorhabditi... 54 3e-06
UniRef50_A7NYR5 Cluster: Chromosome chr6 scaffold_3, whole genom... 51 3e-05
UniRef50_UPI0000DD8724 Cluster: PREDICTED: similar to transcript... 50 8e-05
UniRef50_Q03071 Cluster: Elongin-C; n=2; Saccharomyces cerevisia... 49 1e-04
UniRef50_Q9FIG0 Cluster: Similarity to elongin C; n=1; Arabidops... 48 2e-04
UniRef50_A4S5I3 Cluster: Predicted protein; n=2; Ostreococcus|Re... 48 2e-04
UniRef50_Q9USX9 Cluster: Elongin C; n=1; Schizosaccharomyces pom... 46 7e-04
UniRef50_Q4PFY4 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_A2EBN3 Cluster: Skp1 family, tetramerisation domain con... 44 0.003
UniRef50_Q0ULV2 Cluster: Predicted protein; n=4; Pezizomycotina|... 44 0.003
UniRef50_Q751F9 Cluster: Elongin-C; n=3; Saccharomycetales|Rep: ... 41 0.036
UniRef50_A5AR54 Cluster: Putative uncharacterized protein; n=1; ... 39 0.11
UniRef50_Q5KPL1 Cluster: Transcriptional elongation regulator, p... 39 0.15
UniRef50_A3LXC0 Cluster: Predicted protein; n=5; Saccharomycetal... 37 0.45
UniRef50_Q384S2 Cluster: Putative uncharacterized protein; n=3; ... 36 1.0
UniRef50_Q384S1 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q8X0M3 Cluster: Related to Elongin C transcription elon... 35 1.8
UniRef50_A5B7M5 Cluster: Putative uncharacterized protein; n=1; ... 33 7.3
UniRef50_Q5FNS0 Cluster: Putative uncharacterized protein; n=1; ... 33 9.7
UniRef50_Q9U0K8 Cluster: Putative uncharacterized protein PFD038... 33 9.7
UniRef50_Q1JSQ3 Cluster: Dead-box helicase, putative; n=1; Toxop... 33 9.7
UniRef50_A4RNF8 Cluster: Predicted protein; n=2; Magnaporthe gri... 33 9.7
>UniRef50_Q1HQ04 Cluster: Transcription elongation factor B
polypeptide 1; n=4; Coelomata|Rep: Transcription
elongation factor B polypeptide 1 - Bombyx mori (Silk
moth)
Length = 134
Score = 152 bits (369), Expect = 8e-36
Identities = 73/83 (87%), Positives = 73/83 (87%)
Frame = +2
Query: 5 MSEQPSVTNVADEQHXXXXXXXXXXEEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALI 184
MSEQPSVTNVADEQH EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALI
Sbjct: 1 MSEQPSVTNVADEQHSASGSGSIGGEEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALI 60
Query: 185 SGTIKAMLSGPGQFAENEANEVN 253
SGTIKAMLSGPGQFAENEANEVN
Sbjct: 61 SGTIKAMLSGPGQFAENEANEVN 83
Score = 109 bits (262), Expect = 7e-23
Identities = 50/50 (100%), Positives = 50/50 (100%)
Frame = +1
Query: 256 REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 405
REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC
Sbjct: 85 REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 134
>UniRef50_Q15369 Cluster: Transcription elongation factor B
polypeptide 1; n=48; Bilateria|Rep: Transcription
elongation factor B polypeptide 1 - Homo sapiens (Human)
Length = 112
Score = 121 bits (291), Expect = 2e-26
Identities = 58/69 (84%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Frame = +2
Query: 80 EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNL- 256
EEK YGGCEGPDAMYVKL+SSDGHEFIVKREHAL SGTIKAMLSGPGQFAENE NEVN
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 257 ERYHHTYSK 283
E H SK
Sbjct: 64 EIPSHVLSK 72
Score = 106 bits (254), Expect = 6e-22
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = +1
Query: 256 REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 405
REIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAPEIALE+LMAANFLDC
Sbjct: 63 REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>UniRef50_Q54Q05 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 109
Score = 62.9 bits (146), Expect = 8e-09
Identities = 26/51 (50%), Positives = 41/51 (80%)
Frame = +1
Query: 250 QLREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 402
+ REI + VL+KV YF +K +YTNS+T++PEFPI ++ +++L+AA+FLD
Sbjct: 58 RFREISTPVLEKVIQYFYFKNKYTNSTTDLPEFPINEKVVVDLLLAAHFLD 108
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Frame = +2
Query: 125 VKLVSSDGHEFIVKREHALISGTIKAMLSGP-GQFAENEANEV 250
++L SS GHEF++ R+ + +SGTIK+MLSG F E++ NE+
Sbjct: 15 LRLYSSTGHEFVLSRKMSYVSGTIKSMLSGDNSNFMEDQNNEI 57
>UniRef50_Q6CHY2 Cluster: Yarrowia lipolytica chromosome A of strain
CLIB122 of Yarrowia lipolytica; n=2;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome A
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 105
Score = 58.4 bits (135), Expect = 2e-07
Identities = 24/50 (48%), Positives = 38/50 (76%)
Frame = +1
Query: 253 LREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 402
L++IP V +K+C Y Y ++Y + ++IPEF I PE+ALE+L+AA++LD
Sbjct: 55 LQDIPHDVAEKLCEYLYYSLKYKDQVSDIPEFEIPPEMALELLVAADYLD 104
Score = 53.6 bits (123), Expect = 5e-06
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = +2
Query: 104 EGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNLERYHHTYSK 283
E P YV L+SSDGHEF + +E A +S +K M+ G G F E N++ L+ H ++
Sbjct: 5 EQPQEGYVGLISSDGHEFWITKEAACVSKVLKPMVQGDGHFRETLDNKIPLQDIPHDVAE 64
Query: 284 K 286
K
Sbjct: 65 K 65
>UniRef50_Q23153 Cluster: Elongin c protein 2; n=1; Caenorhabditis
elegans|Rep: Elongin c protein 2 - Caenorhabditis
elegans
Length = 163
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +1
Query: 259 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 405
+ SH+LQKVC Y YK +Y +S P F I P+IA+++L AAN L+C
Sbjct: 116 DFQSHILQKVCHYLAYKTKYRHSRV-APPFDIPPDIAMDLLAAANELEC 163
Score = 50.0 bits (114), Expect = 6e-05
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +2
Query: 98 GCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGP 217
G EGP + YVKLVS+D HEFI+KRE A+ S +++ + + P
Sbjct: 62 GLEGPRSKYVKLVSNDDHEFIIKREVAMTSKSLRELFANP 101
>UniRef50_A7NYR5 Cluster: Chromosome chr6 scaffold_3, whole genome
shotgun sequence; n=4; Magnoliophyta|Rep: Chromosome
chr6 scaffold_3, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 98
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +2
Query: 125 VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNLERYHHTYSKK 286
VKL+S++G EF++ + A++S TI+ ML+ PG FAE E EV T +K
Sbjct: 7 VKLISAEGFEFVIDKRAAMVSQTIRNMLTSPGSFAEREHGEVTFPEISTTILEK 60
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/47 (44%), Positives = 35/47 (74%)
Frame = +1
Query: 259 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFL 399
EI + +L+K+C YF + +++ +S + EFPI PE+ LE++MAAN+L
Sbjct: 52 EISTTILEKICQYFYWSLQF--ASGKDTEFPIEPELTLELMMAANYL 96
>UniRef50_UPI0000DD8724 Cluster: PREDICTED: similar to transcription
elongation factor B (SIII), polypeptide 1; n=1; Homo
sapiens|Rep: PREDICTED: similar to transcription
elongation factor B (SIII), polypeptide 1 - Homo sapiens
Length = 101
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = +1
Query: 253 LREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFP 351
LR+ PS VL K C YFTY YT SSTEIP+FP
Sbjct: 61 LRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFP 93
Score = 42.3 bits (95), Expect = 0.012
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 80 EEKVYGGCEGPDAMYVK--LVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVN 253
EEK Y CE + M L+S EF+VK A S T+K +L+GP FAE EVN
Sbjct: 4 EEKTYSVCESSNTMMSNGYLLSP---EFLVKIRTAQTSATMKPLLTGPDHFAEKGTIEVN 60
Query: 254 L 256
L
Sbjct: 61 L 61
>UniRef50_Q03071 Cluster: Elongin-C; n=2; Saccharomyces
cerevisiae|Rep: Elongin-C - Saccharomyces cerevisiae
(Baker's yeast)
Length = 99
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Frame = +1
Query: 244 RGQLREIPSHVLQKVCMYFTYKVRYTNSS---TEIPEFPIAPEIALEVLMAANFL 399
R +L++ SH+L+K Y Y ++Y+ S EIPEF I E++LE+L+AA++L
Sbjct: 43 RIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97
Score = 36.7 bits (81), Expect = 0.59
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 122 YVKLVSSDGHEFIVKREHALISGTIKAMLSGP 217
+V LVS D E+ + R A+IS T+KAM+ GP
Sbjct: 5 FVTLVSKDDKEYEISRSAAMISPTLKAMIEGP 36
>UniRef50_Q9FIG0 Cluster: Similarity to elongin C; n=1; Arabidopsis
thaliana|Rep: Similarity to elongin C - Arabidopsis
thaliana (Mouse-ear cress)
Length = 96
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +2
Query: 125 VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNLERYHHTYSKK 286
VKL+S +G EF++ RE A++S TI++ML+ PG F+E++ V T +K
Sbjct: 5 VKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEK 58
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +1
Query: 259 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFL 399
+I + +L+K+C YF + ++Y+ EF I PE+ LE++MAAN+L
Sbjct: 50 DISTTILEKICQYFYWSLQYSRGKET--EFHIEPELTLELMMAANYL 94
>UniRef50_A4S5I3 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 108
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = +1
Query: 250 QLREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 402
+LR+I + +L+K+ Y YK + +SS P F I E A+E+LMAANFLD
Sbjct: 57 KLRDISTAILRKIIDYCEYKRAHEHSSKAPPRFQIDEEDAIELLMAANFLD 107
>UniRef50_Q9USX9 Cluster: Elongin C; n=1; Schizosaccharomyces
pombe|Rep: Elongin C - Schizosaccharomyces pombe
(Fission yeast)
Length = 97
Score = 46.4 bits (105), Expect = 7e-04
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +1
Query: 259 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 402
+I + +L+KVC Y Y RY N +IP+F I PE+ LE+L+ A +L+
Sbjct: 50 DIRATLLEKVCEYLHYNYRYKNQ-LDIPKFDIPPEMVLELLVTAEYLE 96
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +2
Query: 122 YVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNLERYHHTYSKK 286
YV+L+S DG FI+++E A +SGTI+A+L+ G F+E + NE T +K
Sbjct: 5 YVRLISGDGFVFILEKEIACLSGTIRAILN-EGIFSEAQKNECTFPDIRATLLEK 58
>UniRef50_Q4PFY4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 180
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Frame = +1
Query: 259 EIPSHVLQKVCMYFTYKVRYTNSST-EIPEFP--IAPEIALEVLMAANFLD 402
+I VL+KV Y +K +Y+ ++ ++P+F I PEIALE+LMAA+FL+
Sbjct: 21 QIRGEVLEKVIEYLHFKTKYSGATNVDVPDFRNRIPPEIALELLMAADFLE 71
>UniRef50_A2EBN3 Cluster: Skp1 family, tetramerisation domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
Skp1 family, tetramerisation domain containing protein -
Trichomonas vaginalis G3
Length = 136
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +2
Query: 122 YVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNL 256
++KL+S+DG+ FIV ++ A+IS TI+ ML G G F E ++ + L
Sbjct: 42 FLKLMSNDGYVFIVDKKTAMISQTIRNMLYGGGNFEEAQSKTIRL 86
>UniRef50_Q0ULV2 Cluster: Predicted protein; n=4;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 135
Score = 44.4 bits (100), Expect = 0.003
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +2
Query: 122 YVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNL 256
YV LVS+DG+EF + R A I+GTIK L F EN N ++L
Sbjct: 9 YVTLVSTDGYEFKILRSAACIAGTIKKALDPLSGFRENTQNRIDL 53
Score = 41.1 bits (92), Expect = 0.028
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 274 VLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 402
VL+KVC Y Y ++ S ++ + I PE+ LE+L+AA++LD
Sbjct: 78 VLEKVCEYLYYNQKHAESK-DVSDMDIPPELCLELLIAADYLD 119
>UniRef50_Q751F9 Cluster: Elongin-C; n=3; Saccharomycetales|Rep:
Elongin-C - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 100
Score = 40.7 bits (91), Expect = 0.036
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +1
Query: 253 LREIPSHVLQKVCMYFTY--KVRYTNSSTEIPEFPIAPEIALEVLMAANFL 399
L I S +L KV Y Y + ++ + +IP+F + PEI+LE+L+AA++L
Sbjct: 48 LPTIESSMLAKVVEYLEYLEEYKHKDDGEDIPQFEVPPEISLELLLAADYL 98
Score = 35.9 bits (79), Expect = 1.0
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +2
Query: 122 YVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNL 256
+V LVSSDG F V RE A++S T+ ML FAE + +V L
Sbjct: 6 HVTLVSSDGKSFEVPRERAMLSPTLAKMLD--SSFAEAKEAKVTL 48
>UniRef50_A5AR54 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 353
Score = 39.1 bits (87), Expect = 0.11
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +2
Query: 125 VKLVSSDGHEFIVKREHALISGTIKAMLSGPG 220
VKL+S++G EF++ + A++S TI+ ML+ PG
Sbjct: 7 VKLISAEGFEFVIDKRAAMVSQTIRNMLTSPG 38
>UniRef50_Q5KPL1 Cluster: Transcriptional elongation regulator,
putative; n=1; Filobasidiella neoformans|Rep:
Transcriptional elongation regulator, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 113
Score = 38.7 bits (86), Expect = 0.15
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +2
Query: 110 PDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNLER 262
P+ YV L S+DG+ F+V R+ A SG +K+ML F E++ +++
Sbjct: 12 PEDDYVLLESADGYTFVVSRKIACASGMLKSMLDEDAAFEESKNKTCRIQQ 62
Score = 36.7 bits (81), Expect = 0.59
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Frame = +1
Query: 274 VLQKVCMYFTYKVRYTNS-STEIPE-FP--IAPEIALEVLMAANFLDC 405
+L KV Y YKV+++ + E+ E F I P IALE+L AA+FLDC
Sbjct: 66 ILAKVIEYLAYKVQWSECLAEEVNEDFSDRIDPYIALELLTAADFLDC 113
>UniRef50_A3LXC0 Cluster: Predicted protein; n=5;
Saccharomycetales|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 98
Score = 37.1 bits (82), Expect = 0.45
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 292 MYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 402
+Y+ YK + S IPEF I +ALE+L+ A+FLD
Sbjct: 61 LYYHYKYKEQAESGAIPEFHIPTHLALELLVKADFLD 97
Score = 33.9 bits (74), Expect = 4.2
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Frame = +2
Query: 122 YVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNLER------------- 262
YV LVS+D H+F+V +E A IS +++ F E + +++L+
Sbjct: 7 YVTLVSADNHKFVVLKEVASISSVLRSTQG----FEEGKTGKISLDMDGDILECVVEYLY 62
Query: 263 YHHTYSKKSACTSRTRYAIPTRL 331
YH+ Y +++ + + IPT L
Sbjct: 63 YHYKYKEQAESGAIPEFHIPTHL 85
>UniRef50_Q384S2 Cluster: Putative uncharacterized protein; n=3;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma brucei
Length = 136
Score = 35.9 bits (79), Expect = 1.0
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 265 PSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 405
P+ +L+ V Y YK RY + P F + +IAL+++ A L C
Sbjct: 90 PTALLEVVIKYLYYKHRYEGDTDYRPPFDVPRQIALDIMKLAQVLQC 136
>UniRef50_Q384S1 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 212
Score = 35.5 bits (78), Expect = 1.4
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +2
Query: 101 CEGPDAMYVKLVSSDGHEFIVKREHALISGTIK-AMLSGPGQFAENEANEV 250
CE P M V L SSDGH F+V R A++SG ++ AM + F +N ++ V
Sbjct: 40 CE-PSYM-VCLESSDGHRFLVDRNCAMVSGVMRQAMRNKLSDFDDNNSSHV 88
>UniRef50_Q8X0M3 Cluster: Related to Elongin C transcription
elongation factor; n=10; Pezizomycotina|Rep: Related to
Elongin C transcription elongation factor - Neurospora
crassa
Length = 109
Score = 35.1 bits (77), Expect = 1.8
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 107 GPDAMYVKLVSSDGHEFIVKREHALISGTIKAML 208
G + Y+ LVS DG EF+V RE L S I+ ML
Sbjct: 8 GGASKYITLVSKDGFEFVVLREATLCSDYIRGML 41
>UniRef50_A5B7M5 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 646
Score = 33.1 bits (72), Expect = 7.3
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = -1
Query: 234 FSANWPGPLSIALIVPDIRACSLFTMNSCPSEDTSFTYIAS------GPSHPPYTFSSPP 73
F NW GP I + PD A + + SE T+ + S P ++ P
Sbjct: 301 FRPNWRGPYFIRELTPDDAAWLMDLDGNRFSESTNVDQLKSDFCRDESPDKDDFSGFDCP 360
Query: 72 ILPDPLAECC 43
I+ DPL +CC
Sbjct: 361 IIYDPLVDCC 370
>UniRef50_Q5FNS0 Cluster: Putative uncharacterized protein; n=1;
Gluconobacter oxydans|Rep: Putative uncharacterized
protein - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 199
Score = 32.7 bits (71), Expect = 9.7
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 179 LISGTIKAMLSGPGQFAENEANEVNLERYHHTYSKKSAC----TSRTRYAIPTRLQRYQS 346
L++ T A LSG G F A++ E T AC S + T + +Y
Sbjct: 9 LVAMTATAALSGCGYFDSRSAHKAQYEMVGMTSYDLQACAGIPASTKKLNDTTEIWQYDG 68
Query: 347 FRSLPRSPSKC*WLPTSSTV 406
++LP PS ++P S +
Sbjct: 69 SKALPTMPSDSGFIPVQSAI 88
>UniRef50_Q9U0K8 Cluster: Putative uncharacterized protein PFD0385w;
n=3; Eukaryota|Rep: Putative uncharacterized protein
PFD0385w - Plasmodium falciparum (isolate 3D7)
Length = 1960
Score = 32.7 bits (71), Expect = 9.7
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = -1
Query: 681 EHSSGNI*YCVSLNKIIYHQFHVSILF----ISLLTNLDHIQ*TNLQVIQYNSI*EQNLY 514
++S+ N Y + N ++Y + S LF + + T+ D+IQ Q + YN++ + N Y
Sbjct: 1790 DYSNENNEY-IHKNSVLYENVNSSELFPEEGVDIYTDDDNIQDEYDQEVNYNALQQNNKY 1848
Query: 513 LPLNSRPIYITN 478
L NSR +Y N
Sbjct: 1849 LSSNSR-LYSKN 1859
>UniRef50_Q1JSQ3 Cluster: Dead-box helicase, putative; n=1;
Toxoplasma gondii|Rep: Dead-box helicase, putative -
Toxoplasma gondii
Length = 822
Score = 32.7 bits (71), Expect = 9.7
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -1
Query: 213 PLSIALIVPDIRACSLFTMNSCPSEDTSFTYIASGPSHPPYTFSSPPILPDPLAECCSS 37
P S + D R ++ ED S ++ PS Y + PP L DP E C S
Sbjct: 393 PFSFSSEADDTRQEETEDVDLPKPEDASKDTVSPSPSSGNYVLAGPPALVDPFVEFCES 451
>UniRef50_A4RNF8 Cluster: Predicted protein; n=2; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 507
Score = 32.7 bits (71), Expect = 9.7
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 257 ERYHHTYSKKSACTSRTRYAIPTRLQRYQS 346
ER HHT S+KS+ T ++R A+P++ + Q+
Sbjct: 196 ERRHHTSSRKSSHTGKSRPAVPSQYEMLQA 225
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,151,178
Number of Sequences: 1657284
Number of extensions: 13676298
Number of successful extensions: 35192
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 33661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35173
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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