Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20902
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual      46   4e-06
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    28   1.2  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    27   2.8  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   3.7  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   4.9  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   4.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.5  

>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 97

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 21/48 (43%), Positives = 32/48 (66%)
 Frame = +1

Query: 259 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 402
           +I + +L+KVC Y  Y  RY N   +IP+F I PE+ LE+L+ A +L+
Sbjct: 50  DIRATLLEKVCEYLHYNYRYKNQ-LDIPKFDIPPEMVLELLVTAEYLE 96



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 23/55 (41%), Positives = 35/55 (63%)
 Frame = +2

Query: 122 YVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNLERYHHTYSKK 286
           YV+L+S DG  FI+++E A +SGTI+A+L+  G F+E + NE        T  +K
Sbjct: 5   YVRLISGDGFVFILEKEIACLSGTIRAILN-EGIFSEAQKNECTFPDIRATLLEK 58


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 125 VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQ 223
           +KL+SSD  EF+V +  A  S  IK ML   G+
Sbjct: 4   IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGE 36


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 274 VLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAAN 393
           ++ K CM    ++RY  S T I   P  PE    VLM+ N
Sbjct: 184 IVHKDCMRILREIRYDLSFTRISSSPYLPE--THVLMSEN 221


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 402 VEEVGSHQHFEGDLGSDRKLWYLCRRVGIAYLV 304
           +E+ G+H  ++ DLG    L + CRR  +  LV
Sbjct: 669 IEQQGNHPLYDMDLGIRLCLQFNCRRSAVKILV 701


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 733 FLMSLEKLYNNSTLSLARAFIRQYLI 656
           FL  +EK Y N TL L RA + + ++
Sbjct: 193 FLAKIEKKYGNITLGLIRALLAREIL 218


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 141 EDTSFTYIASGPSHPPYTFSSPPILPDPLA 52
           + T+ T  A+   +P   F  PP++P P A
Sbjct: 347 QTTTTTTEAAAAQYPQAAFPPPPVMPQPAA 376


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 158  IVKREHALISGTIKAMLSGPGQFAENEANEV 250
            ++ ++  LISGT+++ L    ++ + E NE+
Sbjct: 1259 LIPQDPVLISGTVRSNLDPFEEYGDGELNEI 1289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,895
Number of Sequences: 5004
Number of extensions: 60605
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)