Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20902
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0096 - 28327308-28327389,28329175-28329280,28329375-28329561     54   1e-07
04_03_0314 - 14238620-14240128                                         31   0.95 
09_02_0190 + 5556223-5556705                                           29   2.9  
08_02_1472 + 27357001-27357277,27357362-27357369                       29   2.9  
04_04_0261 + 24007790-24009098,24009191-24011118                       29   5.1  
05_07_0167 + 28115290-28115349,28115952-28115996,28116087-281161...    28   6.7  
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    28   6.7  
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    28   8.9  

>11_08_0096 - 28327308-28327389,28329175-28329280,28329375-28329561
          Length = 124

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
 Frame = +1

Query: 247 GQLR--EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 402
           G++R  EI + +L+K+C YF + + Y+ S  E  EF I PEI LE++MAAN+LD
Sbjct: 71  GEVRFPEISTPILEKICQYFYWSLHYS-SGKETSEFQIEPEITLELMMAANYLD 123



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/43 (44%), Positives = 32/43 (74%)
 Frame = +2

Query: 122 YVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEV 250
           +VKL+S++G EF+V ++ A++S T++ ML+ PG F+E    EV
Sbjct: 31  FVKLISAEGFEFVVDKKAAMVSNTLRNMLTSPGGFSETREGEV 73


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -1

Query: 204 IALIVPDIRACSLFTMNSCPSEDTSFTYIASGPSHPPYTFSSPPILPDPL 55
           IA + PD+     F    CP     FT++ +   H       PP  P PL
Sbjct: 203 IAHLAPDLGLAMDFRATLCPQHPDLFTFVNTSHGHALQLVDPPPPPPPPL 252


>09_02_0190 + 5556223-5556705
          Length = 160

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 125 VKLVSSDGHEFIVKREHALISGTIKAMLSG 214
           + LVS DG  F V R+ AL+  T++ M+ G
Sbjct: 16  IDLVSKDGERFEVARDAALLCKTLRWMIKG 45


>08_02_1472 + 27357001-27357277,27357362-27357369
          Length = 94

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 63  DPLAECCSSATLVTEGCS 10
           DP AECCS+ + +++GC+
Sbjct: 54  DPSAECCSALSSISQGCA 71


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 319 TNSSTEIPEFPIAPEIALEVL 381
           TN S  +PEFP A E +LEVL
Sbjct: 309 TNLSGSLPEFPAAGEASLEVL 329


>05_07_0167 +
           28115290-28115349,28115952-28115996,28116087-28116179,
           28116259-28116342,28116949-28117131,28117234-28117276,
           28117671-28117891,28118060-28118137,28118404-28118529,
           28118616-28118825
          Length = 380

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 120 IASGPSHPPYTFSSPPILPDP 58
           IASG + PPY +   PI+P P
Sbjct: 52  IASGHAPPPYMWGPQPIMPPP 72


>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
            33319949-33320011,33320103-33320496,33320684-33320796,
            33320932-33321639,33321667-33323199,33323395-33323607,
            33323718-33324700,33324890-33325423,33325694-33325820,
            33326083-33326162,33327347-33327377,33327949-33328053,
            33328119-33328124,33328349-33328985,33329144-33329478,
            33330394-33331113
          Length = 2792

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -1

Query: 267  WYLSKLTSLASFSANWPGPLSIALIVPDIRACSLFTMNSCPSEDTSFTYIASGPSHPPY 91
            W++S   SL   S+    PL+ +   P+   C+L  +   P  D SF+ IA GP   PY
Sbjct: 1623 WFISLHLSLMHHSSK-NLPLTTS---PEDLLCALRKIPCIPLSDGSFSSIADGPIWLPY 1677


>01_01_1220 +
           9862195-9862281,9862427-9862646,9862764-9862916,
           9863016-9863674,9863749-9863852,9863950-9864192,
           9864262-9864376,9864696-9864909,9864995-9865511,
           9866439-9866448,9867363-9867551,9867755-9868084,
           9868639-9868872,9869303-9869743
          Length = 1171

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 243 LASFSANWPGPLSIALIVPDIRACSLFTM-NSCPSEDTSFTYIASGPSHPPYTFSS 79
           +ASFSA  PG L+ A++ PD+ A  +  +  + P+ D         PS  P+   S
Sbjct: 510 VASFSARGPGGLTEAILKPDLMAPGVSILAATIPTADKEDVPAGKNPS--PFAIKS 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,340,164
Number of Sequences: 37544
Number of extensions: 368071
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)