Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20902
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10676| Best HMM Match : Skp1_POZ (HMM E-Value=9.8e-05)              86   3e-17
SB_57492| Best HMM Match : Skp1_POZ (HMM E-Value=0.094)                79   4e-15
SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)                    33   0.24 
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_5075| Best HMM Match : 7tm_1 (HMM E-Value=0)                        31   1.3  
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         29   5.2  
SB_49089| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                 28   9.1  

>SB_10676| Best HMM Match : Skp1_POZ (HMM E-Value=9.8e-05)
          Length = 123

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 37/45 (82%), Positives = 42/45 (93%)
 Frame = +2

Query: 83  EKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGP 217
           E VYGGCEGP+AMYVKL+SSDGHEFI+ R++AL SGTIKAMLSGP
Sbjct: 12  EPVYGGCEGPNAMYVKLISSDGHEFIINRDYALTSGTIKAMLSGP 56


>SB_57492| Best HMM Match : Skp1_POZ (HMM E-Value=0.094)
          Length = 137

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 34/42 (80%), Positives = 39/42 (92%)
 Frame = +2

Query: 83  EKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAML 208
           E VYGGCEGP+AMYVKL+SSDGHEFI+ R++AL SGTIKAML
Sbjct: 92  EPVYGGCEGPNAMYVKLISSDGHEFIINRDYALTSGTIKAML 133


>SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)
          Length = 486

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 260 RYHHTYSKKSACTSRTRYAIPTRLQRYQSFRS 355
           RY HTY  + + TSRTRY++  R +  +++R+
Sbjct: 266 RYSHTYRTRYSLTSRTRYSLTYRTRYARTYRT 297


>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 206 LSGPGQFAENEANEVN--LERYHHTYSKKSACTSRTRYAIPTRLQ 334
           L G   + E+E  E++  L+R  HTY  K+A TSR R  +   +Q
Sbjct: 225 LDGRRTYLEDEKMELSEALDRQRHTYESKNALTSRERARVEQMIQ 269


>SB_5075| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 363

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 184 YKSMLPLHNELMSIRGYQFHIHSIWTFTSSIH 89
           Y  +LP+    M+ RG    I  IW F S+IH
Sbjct: 130 YAIVLPMRTHFMTKRGCHISIGVIWLFASAIH 161


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 651  VSLNKIIYHQFHVSILFISLLTNLDHIQ*TNLQVIQ 544
            V L  +I   FH+ + F+SL+ +L HIQ   L +I+
Sbjct: 1529 VELLSLIEDLFHIQVEFLSLIEDLFHIQVELLSLIE 1564


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 189  PDIRACSLFTMNSCPSEDTSFTYIASGPSHPPYTFSSPPILPDP 58
            PDI+  ++ T  S PS       +A+GP   P     PP+ P P
Sbjct: 1609 PDIKPSNIQTTESTPSISPRGVEVAAGPRRTP-----PPVAPKP 1647


>SB_49089| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 250

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 184 YKSMLPLHNELMSIRGYQFHIHSIWTFTSSIHL 86
           Y +++P  +  ++ RGY F I ++W+   +I L
Sbjct: 52  YATLMPFRHRQLADRGYLFAIIAVWSAACTISL 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,898,032
Number of Sequences: 59808
Number of extensions: 440036
Number of successful extensions: 1184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)