Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20902
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC090999-17|AAK26155.1| 124|Caenorhabditis elegans Elongin c pr... 96 2e-20
U41509-1|AAA82628.2| 163|Caenorhabditis elegans Elongin c prote... 54 8e-08
Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical pr... 29 2.6
U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical p... 28 7.9
Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical p... 28 7.9
Z22181-13|CAA80184.3| 632|Caenorhabditis elegans Hypothetical p... 28 7.9
>AC090999-17|AAK26155.1| 124|Caenorhabditis elegans Elongin c
protein 1 protein.
Length = 124
Score = 96.3 bits (229), Expect = 2e-20
Identities = 41/50 (82%), Positives = 47/50 (94%)
Frame = +1
Query: 256 REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 405
REIPSHVLQKVC YF YKVRYT+++TEIPEFPI P++ALE+LMAANFLDC
Sbjct: 75 REIPSHVLQKVCQYFAYKVRYTHAATEIPEFPIPPDVALELLMAANFLDC 124
Score = 88.2 bits (209), Expect = 5e-18
Identities = 41/57 (71%), Positives = 47/57 (82%)
Frame = +2
Query: 80 EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEV 250
+ K YGG EGP + YVKLVSSD HEFI+KRE AL SGTI+AMLSGPG +AENE+N V
Sbjct: 16 QPKQYGGIEGPTSQYVKLVSSDDHEFIIKRELALTSGTIRAMLSGPGVYAENESNVV 72
>U41509-1|AAA82628.2| 163|Caenorhabditis elegans Elongin c protein
2 protein.
Length = 163
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +1
Query: 259 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 405
+ SH+LQKVC Y YK +Y +S P F I P+IA+++L AAN L+C
Sbjct: 116 DFQSHILQKVCHYLAYKTKYRHSRV-APPFDIPPDIAMDLLAAANELEC 163
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +2
Query: 98 GCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGP 217
G EGP + YVKLVS+D HEFI+KRE A+ S +++ + + P
Sbjct: 62 GLEGPRSKYVKLVSNDDHEFIIKREVAMTSKSLRELFANP 101
>Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = -3
Query: 247 LVSFIFSKLARSAEHSLNSA*YKSMLPLHNELMSIRGYQFHIHSIWTFTSSI-HLLFTTD 71
LV+F + A++ + SA ++ +P+ N I Y + ++ S I HLL+T+D
Sbjct: 167 LVNFPYFLYAQNYTYLGVSACFRGSMPIWNSFSFIVWYLIPLTALVFIYSRISHLLWTSD 226
Query: 70 TARSTS*MLFISNISYRRLLGH 5
+ R +S SN S R G+
Sbjct: 227 SNRQSSRQSHESNGSLERGNGY 248
>Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = -3
Query: 247 LVSFIFSKLARSAEHSLNSA*YKSMLPLHNELMSIRGYQFHIHSIWTFTSSI-HLLFTTD 71
LV+F + A++ + SA ++ +P+ N I Y + ++ S I HLL+T+D
Sbjct: 167 LVNFPYFLYAQNYTYLGVSACFRGSMPIWNSFSFIVWYLIPLTALVFIYSRISHLLWTSD 226
Query: 70 TARSTS*MLFISNISYRRLLGH 5
+ R +S SN S R G+
Sbjct: 227 SNRQSSRQSHESNGSLERGNGY 248
>U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical
protein F48A9.1 protein.
Length = 339
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 230 ENEANEVNLERYHHTYSKKSACTSRTRYAIPTRLQRYQSFRSLPR 364
ENE N+ N ERYHH SK S +R ++ R R++S R
Sbjct: 235 ENEQNQ-NRERYHHRRSKSS---NRDDASVSHRSLRHRSMSPASR 275
>Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 141 EDTSFTYIASGPSHPPYTF--SSPPILPDP 58
+D + + GPS PY F S PP+ P P
Sbjct: 22 DDDDYAELQPGPSPKPYRFTESEPPVPPPP 51
>Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 141 EDTSFTYIASGPSHPPYTF--SSPPILPDP 58
+D + + GPS PY F S PP+ P P
Sbjct: 22 DDDDYAELQPGPSPKPYRFTESEPPVPPPP 51
>Z22181-13|CAA80184.3| 632|Caenorhabditis elegans Hypothetical
protein ZK632.7 protein.
Length = 632
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 723 LWKSYIIIALCLWQEHSSGNI*YCVSLNKIIYHQFHVSILFISLLTNLD 577
+W I IA L HSSG + LNKII + + I F + LD
Sbjct: 370 IWSYIIQIAAALRAIHSSGLACRTLDLNKIITYGNKIMISFCGIQDVLD 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,364,997
Number of Sequences: 27780
Number of extensions: 341030
Number of successful extensions: 922
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -