Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20902
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 138 DTSFTYIASGPSHPPYTFSSPPILPDPLAECCSSATL 28
           D    YI  G + P     SP   P P  +C S+ T+
Sbjct: 725 DIIHNYIMRGEASP----RSPNASPSPAEQCASTTTI 757


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 715 KLYNNSTLSLARAFIRQYLILC 650
           K  +N +L+ AR  IRQ  +LC
Sbjct: 283 KTEDNESLNAARMLIRQEGLLC 304


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 156 NSCPSEDTSFTYIASGPSHPPYTFSSPP 73
           +SC     +   I S P HPP + +S P
Sbjct: 77  SSCDPVPGNLEQIGSRPLHPPASSTSLP 104


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 657 IRYCRMNALAKDKVLLLYNFSR 722
           IR C  NA  +DK L    FSR
Sbjct: 98  IRQCVDNAKNEDKCLTAQKFSR 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,905
Number of Sequences: 438
Number of extensions: 4274
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)