Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20901
(622 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 42 3e-04
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 42 3e-04
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 42 4e-04
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 40 0.001
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 39 0.003
At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein ... 30 0.004
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 37 0.012
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 36 0.016
At5g43170.1 68418.m05269 zinc finger (C2H2 type) protein 3 (AZF3... 35 0.050
At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein ... 29 0.061
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 34 0.066
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ... 30 0.081
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ... 34 0.087
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 33 0.12
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 33 0.15
At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein ... 33 0.20
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 31 0.47
At3g53600.1 68416.m05920 zinc finger (C2H2 type) family protein ... 31 0.62
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 31 0.62
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 31 0.81
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 30 1.1
At5g52010.1 68418.m06454 zinc finger (C2H2 type) family protein ... 30 1.1
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 30 1.1
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 30 1.1
At4g04404.1 68417.m00636 zinc finger (C2H2 type) family protein ... 30 1.4
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 30 1.4
At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1... 29 1.9
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 29 1.9
At4g14200.1 68417.m02191 expressed protein 29 1.9
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ... 29 1.9
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 29 1.9
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ... 29 2.5
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 2.5
At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein ... 29 2.5
At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein ... 29 2.5
At5g54050.1 68418.m06722 DC1 domain-containing protein 29 3.3
At5g21930.1 68418.m02545 ATPase E1-E2 type family protein / halo... 29 3.3
At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein ... 29 3.3
At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ... 29 3.3
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 29 3.3
At3g46090.1 68416.m04987 zinc finger (C2H2 type) family protein ... 28 4.3
At3g46080.1 68416.m04986 zinc finger (C2H2 type) family protein ... 28 4.3
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ... 28 4.3
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 28 4.3
At2g01970.1 68415.m00132 endomembrane protein 70, putative 28 4.3
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 28 5.7
At3g49930.1 68416.m05460 zinc finger (C2H2 type) family protein ... 28 5.7
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam... 28 5.7
At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N domain-... 27 7.6
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.6
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.6
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 27 7.6
At4g35700.1 68417.m05067 zinc finger (C2H2 type) family protein ... 27 7.6
At4g28190.1 68417.m04041 expressed protein 27 7.6
At1g69690.1 68414.m08020 TCP family transcription factor, putati... 27 7.6
At1g26790.1 68414.m03261 Dof-type zinc finger domain-containing ... 27 7.6
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.6
At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2... 24 8.9
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 251 KYLNTHMFKHKIPQFKCD--GCKRAFHSKLLLQRHYQADHVGIKNHVCNI--CGKAFGYR 418
++L TH + KC+ GC F LQ+H +A H I+ VC CG F Y+
Sbjct: 291 RHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYK 350
Query: 419 NAMMKHQ 439
+ KH+
Sbjct: 351 HVRNKHE 357
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 126 SYKCQFCPYRGRYPELLKTHLRTHTGEYQFMC--TECPARF 242
++ CQ C + P LK H+++H+ E F C +C A +
Sbjct: 65 NHTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASY 105
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 254 YLNTHMFKHKIPQFKC--DGCKRAFHSKLLLQRHYQADH 364
+LN H+ HK FKC + CK F + + RH + H
Sbjct: 110 HLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYH 148
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 251 KYLNTHMFKHKIPQFKCD--GCKRAFHSKLLLQRHYQADHVGIKNHVCNI--CGKAFGYR 418
++L TH + KC+ GC F LQ+H +A H I+ VC CG F Y+
Sbjct: 203 RHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYK 262
Query: 419 NAMMKHQ 439
+ KH+
Sbjct: 263 HVRNKHE 269
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 254 YLNTHMFKHKIPQFKC--DGCKRAFHSKLLLQRHYQADH 364
+LN H+ HK FKC + CK F + + RH + H
Sbjct: 22 HLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYH 60
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +3
Query: 36 HKKYVCD--KCGKSFRLRCAYHNHNRRHTNDFSYKCQF--CPYRGRYPELLKTHLRTHTG 203
HK+ +C CGK+F H R H++D KC + C ++ H+R HTG
Sbjct: 1257 HKRNICPIKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTG 1316
Query: 204 EYQFMCTE--CPARFLFKS 254
++C E C F F S
Sbjct: 1317 ARPYVCAEPDCGQTFRFVS 1335
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +3
Query: 36 HKKYVC--DKCGKSFRLRCAYHNHNRRHTNDFSYKCQF--CPYRGRYPELLKTHLRTHTG 203
HK+ C + CGK FR H R H ++ ++C + C ++ HLR HTG
Sbjct: 1235 HKRNRCTHEGCGKKFRAHKYLVLHQRVHKDERPFECSWKGCSMTFKWQWARTEHLRLHTG 1294
Query: 204 EYQFMC--TECPARFLFKS 254
E ++C C F F S
Sbjct: 1295 ERPYICKVDGCGLSFRFVS 1313
Score = 32.3 bits (70), Expect = 0.27
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 302 DGCKRAFHSKLLLQRH--YQADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHKREK 463
+GCK F SK LQ H + H G CGK F ++ HQ RVHK E+
Sbjct: 1220 EGCKMTFESKAKLQTHKRNRCTHEG--------CGKKFRAHKYLVLHQ-RVHKDER 1266
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 9 DHMTMHDPDHKKYVC--DKCGKSFRLRCAYHNHNRR 110
+H+ +H + + Y+C D CG SFR Y H R+
Sbjct: 1287 EHLRLHTGE-RPYICKVDGCGLSFRFVSDYSRHRRK 1321
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 6 RDHMTMHDPDHKKYVCDK--CGKSFRLRCAYHNHNRRHTNDFSYKCQF--CPYRGRYPEL 173
R H +H ++YVCD+ CGK F H HT + +Y C + C
Sbjct: 97 RKHSHIHG--ERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFN 154
Query: 174 LKTHLRTHTGEYQFMC 221
L++H++TH+ E +C
Sbjct: 155 LRSHMKTHSQENYHIC 170
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 54 DKCGKSFRLRCAYHNHNRRHTNDFSYKC--QFCPYRGRYPELLKTHLRTHTGEYQFMCT 224
D CGK+F A H+ H + Y C + C + LK H HTGE ++CT
Sbjct: 84 DGCGKTFFDVSALRKHSHIH-GERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICT 141
Score = 31.9 bits (69), Expect = 0.35
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 12 HMTMHDPDHKKYVC--DKCGKSFRLRCAYHNHNRRHTNDFSYKCQFCPYRG---RYPELL 176
H +H + + Y+C + CGK+F L +H + H+ + +Y CPY G RY
Sbjct: 128 HYLIHTGE-RNYICTYEGCGKAFSLDFNLRSHMKTHSQE-NY--HICPYSGCVKRYAHEY 183
Query: 177 KTHLRTHTGEY 209
K L+ H Y
Sbjct: 184 K--LKNHVAAY 192
>At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 270
Score = 30.3 bits (65), Expect(2) = 0.004
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 290 QFKCDGCKRAFHSKLLLQRHYQADHVGIKNHVCN 391
+F+CDGCK+ F S L H +A H +K N
Sbjct: 147 RFECDGCKKVFGSHQALGGH-RATHKDVKGCFAN 179
Score = 27.1 bits (57), Expect(2) = 0.004
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 377 NHVCNICGKAFGYRNAMMKHQR 442
NH CNIC + F A+ H R
Sbjct: 210 NHRCNICSRVFSSGQALGGHMR 231
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 338 LQRHYQADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHK 454
LQ HY+ H GIK +C CGKAF R H++ K
Sbjct: 288 LQTHYKRKH-GIKPFMCRKCGKAFAVRGDWRTHEKNCGK 325
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 39 KKYVCDKCGKSFRLRCAYHNHNR 107
K ++C KCGK+F +R + H +
Sbjct: 299 KPFMCRKCGKAFAVRGDWRTHEK 321
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 36.3 bits (80), Expect = 0.016
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Frame = +2
Query: 257 LNTHMFKHKIPQFKCDGCKRAFHS--------------KLLLQ----RHYQADHVGIKNH 382
LN H H QF+C C + F S KL ++ +H D+ G H
Sbjct: 35 LNQHTESHTSNQFECKTCNKRFSSFQALGGHRASHKKPKLTVEQKDVKHLSNDYKGNHFH 94
Query: 383 VCNICGKAFGYRNAMMKHQRR 445
C+IC ++FG A+ H RR
Sbjct: 95 KCSICSQSFGTGQALGGHMRR 115
>At5g43170.1 68418.m05269 zinc finger (C2H2 type) protein 3 (AZF3)
identical to Cys2/His2-type zinc finger protein 3
[Arabidopsis thaliana] gi|6009889|dbj|BAA85109
Length = 193
Score = 34.7 bits (76), Expect = 0.050
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Frame = +2
Query: 287 PQFKCDGCKRAFHSKLLLQRHYQADH---------------VGIKNHVCNICGKAFGYRN 421
P +KC C + F S L H +A H +K+HVC++CGK+F
Sbjct: 73 PSYKCGVCYKTFSSYQALGGH-KASHRSLYGGGENDKSTPSTAVKSHVCSVCGKSFATGQ 131
Query: 422 AMMKHQR 442
A+ H+R
Sbjct: 132 ALGGHKR 138
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 39 KKYVCDKCGKSFRLRCAYHNHNRRH 113
K +VC CGKSF A H R H
Sbjct: 116 KSHVCSVCGKSFATGQALGGHKRCH 140
>At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 28.7 bits (61), Expect(2) = 0.061
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 284 IPQFKCDGCKRAFHSKLLLQRHYQADHVGIK 376
I +F+C GCK+ F S L H +A H +K
Sbjct: 159 IERFECGGCKKVFGSHQALGGH-RASHKNVK 188
Score = 24.6 bits (51), Expect(2) = 0.061
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 377 NHVCNICGKAFGYRNAMMKHQRRVHKREK 463
+H CNIC + F A+ H R ++E+
Sbjct: 221 HHKCNICFRVFSSGQALGGHMRCHWEKEE 249
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 34.3 bits (75), Expect = 0.066
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 338 LQRHYQADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHK 454
LQ HY+ H G K C +CGKAF + H++ K
Sbjct: 249 LQTHYKRKH-GSKPFACRMCGKAFAVKGDWRTHEKNCGK 286
>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 238
Score = 30.3 bits (65), Expect(2) = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 371 IKNHVCNICGKAFGYRNAMMKHQR 442
+K+HVC+IC K+F A+ H+R
Sbjct: 145 VKSHVCSICHKSFATGQALGGHKR 168
Score = 22.6 bits (46), Expect(2) = 0.081
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 287 PQFKCDGCKRAFHSKLLLQRHYQADH 364
P +KC C +AF S L H +A H
Sbjct: 87 PIYKCSVCDKAFSSYQALGGH-KASH 111
>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 272
Score = 33.9 bits (74), Expect = 0.087
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 266 HMFKHKIPQFKCDGCKRAFHSKLLLQRHYQADHVGIKN 379
H + I +++C CK+AF+ + L +H+ + H + N
Sbjct: 98 HKLRSDINEWRCGFCKKAFYEEKYLDKHFDSRHYNLLN 135
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 338 LQRHYQADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHK 454
LQ HY+ H G++ C CGKAF + H++ K
Sbjct: 327 LQTHYKRKH-GVRPFACRRCGKAFAVKGDWRTHEKNCGK 364
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 296 KCDGCKRAFHSKLLLQRHYQADHVGIKNHVCNICGKAFGYRNAMMKH 436
KC GC R F+ K L H + + + C IC K +++ +H
Sbjct: 7 KCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREH 53
>At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 211
Score = 32.7 bits (71), Expect = 0.20
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 371 IKNHVCNICGKAFGYRNAMMKHQRRVHKREKMLHGRM 481
+K H C CGK F A+ HQ HK+E++ R+
Sbjct: 57 MKRHECQYCGKEFANSQALGGHQ-NAHKKERLKKKRL 92
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 299 CDGCKRAFHSKLLLQRHYQADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHK 454
C C R F + +L +H +A H C++C K + M+ H +VHK
Sbjct: 14 CYYCDREFDDEKILVQHQKAKHFK-----CHVCHKKLSTASGMVIHVLQVHK 60
>At3g53600.1 68416.m05920 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 175
Score = 31.1 bits (67), Expect = 0.62
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 281 KIPQFKCDGCKRAFHSK-LLLQRHYQADHVGIKN--HVCNICGKAFGYRNAMMKHQRR 445
K F+ G RA H K L+ Q H +N H C IC + FG A+ H R+
Sbjct: 57 KFDSFQALGGHRASHKKPKLIVDQEQVKHRNKENDMHKCTICDQMFGTGQALGGHMRK 114
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 31.1 bits (67), Expect = 0.62
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 338 LQRHYQADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHKR 457
LQ HY+ H G K C +CGK + H++ KR
Sbjct: 216 LQTHYKRKH-GHKPFSCRLCGKLLAVKGDWRTHEKNCGKR 254
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 30.7 bits (66), Expect = 0.81
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Frame = +2
Query: 281 KIPQFKC-DGCKRAFH---SKLL-----LQRHYQADHVGIKNHVCNICGKAFGYRNAMMK 433
++P + C +GCK + SK L LQ HY+ H G K C CGKA +
Sbjct: 224 RLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKH-GSKPFSCGKCGKALAVKGDWRT 282
Query: 434 HQRRVHK 454
H++ K
Sbjct: 283 HEKNCGK 289
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 362 HVGIKNHVCNICGKAFGYRNAMMKH 436
HVG C+IC K F N M H
Sbjct: 174 HVGPMQFACSICSKTFNRYNNMQMH 198
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 290 QFKCDGCKRAFHSKLLLQRHYQADHVGIKNHVCNIC 397
++KC CK++F+ + L +H+ H + N C
Sbjct: 104 EWKCGYCKKSFNDEKFLDKHFSTRHYNLLNTTDTKC 139
>At5g52010.1 68418.m06454 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 396
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +2
Query: 254 YLNTHMFKHKIPQFKCDGCKRAFHSKLLLQRHYQADHVGIKNHVCNICGKAFGYRNAMMK 433
Y N H F H +P + + +R + ++R + + I ++C +CG+ + K
Sbjct: 114 YANRHAFIH-LPHWVVEE-RRERRNLDFMER--KGEVTPIDPYICGVCGRKCKTNLDLKK 169
Query: 434 HQRRVHKREK 463
H +++H+RE+
Sbjct: 170 HFKQLHERER 179
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 6 RDHMTMHDPDHKKYVCDKCGKSFRLRCAYHNH 101
+ H +HK++VC++C K + ++ Y H
Sbjct: 132 KKHFRRKHSNHKQWVCERCSKGYAVQSDYKAH 163
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +3
Query: 51 CDKCGKSFRLRCAYHNHNRRHTNDFSYKCQFC 146
CDKC + CA N R H Y C C
Sbjct: 807 CDKCEAWQHIICALFNSRRNHGESTKYTCPSC 838
>At4g04404.1 68417.m00636 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 230
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 299 CDGCKRAFHSKLLLQRHYQADHVGIKNHVCNICGKAFGYRNAM--MKHQRRVHKREKMLH 472
C K+ F L L +Q V ++ C ICGK+FG A+ + +R+H+ K
Sbjct: 149 CVELKQDFGELLPLNSKFQKRPVSSCSYRCKICGKSFGCFQALGALGGHQRLHRPIKGKL 208
Query: 473 GRMPSY 490
R Y
Sbjct: 209 ARKRKY 214
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 377 NHVCNICGKAFGYRNAMMKHQRRVHKREKMLHGRMPSY 490
+H C ICGK+F A+ H RR+H+ K R Y
Sbjct: 90 SHRCQICGKSFECYQALGGH-RRLHRPIKGKLARKREY 126
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 29.9 bits (64), Expect = 1.4
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +3
Query: 6 RDHMTMHDPDHKKYVCDKCGKSFRLRCAYHNH 101
+ H +HK+++C++C K + ++ Y H
Sbjct: 135 KKHFRRKHSNHKQWICERCSKGYAVQSDYKAH 166
>At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1)
identical to Cys2/His2-type zinc finger protein 1
[Arabidopsis thaliana] gi|6009887|dbj|BAA85108
Length = 245
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 33 DHKKYVCDKCGKSFRLRCAYHNHNRRH 113
DH+ Y C CGKSF A H H
Sbjct: 93 DHRDYKCTVCGKSFSSYQALGGHKTSH 119
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 6 RDHMTMHDPDHKKYVCDKCGKSFRLRCAYHNHNRRHTND 122
R M +D H K +C C S RCA + R+ +D
Sbjct: 519 RCQMCKYDSGHSKLICMDCDYSICFRCATFPYMARYKHD 557
>At4g14200.1 68417.m02191 expressed protein
Length = 784
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 341 QRHYQADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHKR 457
Q H G KNHVC CG ++ + K+ RR HK+
Sbjct: 4 QDHCSNSPGGGKNHVCTKCGWSYSNPHPSAKN-RRAHKK 41
>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 650
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 377 NHVCNICGKAFGYRNAMMKHQRRVHK--REKM 466
+H C ICGK+F A+ HQ R+H+ +EK+
Sbjct: 42 SHKCKICGKSFECYQALGGHQ-RIHRPIKEKL 72
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 48 VCDKCGKSFRLRCAYHNHNRRHTNDFSYKCQFC 146
+CD C K + L+C H HN + + C C
Sbjct: 339 ICDACEKGYHLKC-LHAHNIKGVPKSEWHCSRC 370
>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 493
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 377 NHVCNICGKAFGYRNAMMKHQR 442
+HVCNIC K+F A+ H+R
Sbjct: 410 DHVCNICHKSFSTGQALGGHKR 431
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 33 DHKKYVCDKCGKSFRLRCAYHNHNRRHTNDFSYKCQFCPYRGRYPELLKTHL-RTHTGEY 209
+ KK++C +CGK F A H R H + +F R P+++ + R+ G+
Sbjct: 75 EEKKHICCECGKRFVSGKALGGHKRIHVLETR---KFSMMR---PKMVSGMVGRSERGDL 128
Query: 210 QFMCTECPARF 242
+ C C +F
Sbjct: 129 EVACCVCYKKF 139
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 18 TMHDPDHKKYVCDKCGKSFRLRC 86
T DP Y CDKCG S + C
Sbjct: 455 TKTDPSVCYYTCDKCGVSLHINC 477
>At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 271
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 383 VCNICGKAFGYRNAMMKHQRRVHKREKMLHGRMP 484
VC+ICG+ FG A+ H R H R++ G +P
Sbjct: 139 VCHICGRGFGSWKAVFGHM-RAH-RDRNYQGFLP 170
>At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 156
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +2
Query: 281 KIPQFKCDGCKRAFHSK-LLLQRHYQADHVGIK--NHVCNICGKAFGYRNAMMKHQRR 445
+ P F+ G RA H + L+ H +K H C ICG F A+ H R+
Sbjct: 42 EFPSFQALGGHRASHRRSAALEGHAPPSPKRVKPVKHECPICGAEFAVGQALGGHMRK 99
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 18 TMHDPDHKKYVCDKCGKSFRLRC 86
T DP + Y CD+CG S + C
Sbjct: 496 TKTDPSVRYYTCDECGLSLHIDC 518
>At5g21930.1 68418.m02545 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein
contains InterPro accession IPR001757: ATPase, E1-E2
type; contains Pfam profiles PF00403:
Heavy-metal-associated domain, PF00702: haloacid
dehalogenase-like hydrolase
Length = 883
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 316 SLAPVTFKLWYFMLKHVSIQVLLN 245
SL+ +TF WY++ H+ VLLN
Sbjct: 456 SLSAMTFAFWYYVGSHIFPDVLLN 479
>At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein
(ZAT10) / salt-tolerance zinc finger protein (STZ)
identical to salt-tolerance zinc finger protein
GB:CAA64820 GI:1565227 from [Arabidopsis thaliana];
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA zinc finger protein STZ/ZAT10
(STZ/ZAT10) GI:9965730
Length = 227
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 374 KNHVCNICGKAFGYRNAMMKHQR 442
K+HVC IC K+F A+ H+R
Sbjct: 134 KSHVCTICNKSFPSGQALGGHKR 156
>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 361
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +3
Query: 21 MHDPDHKKYVCDKCGKSFRLRCAYHNHNRRHTNDFSYKCQFCPYRGRYPELLKTHLRTHT 200
M + ++C C K+F A H R HTN+ S + R + K + H
Sbjct: 1 MEEGKENSFLCKYCYKTFPSGKALGGHIRIHTNENSVGYN-GNKKKRLVDQRKMMAQKHK 59
Query: 201 GEYQFMCTECPARFL 245
+ Q C EC F+
Sbjct: 60 QQQQVGCRECGRVFV 74
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 6 RDHMTMHDPDHKKYVCDKCGKSFRLRCAYHNH 101
+ H HK++VC++C K + ++ Y H
Sbjct: 105 KKHFRRKHSVHKQWVCERCSKGYAVQSDYKAH 136
>At3g46090.1 68416.m04987 zinc finger (C2H2 type) family protein
(ZAT7) identical to zinc finger protein ZAT7
[Arabidopsis thaliana] gi|1418341|emb|CAA67234; contains
Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 168
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 377 NHVCNICGKAFGYRNAMMKHQRRVHKREKM 466
+H C ICG F A+ H RR H+ EK+
Sbjct: 85 SHPCPICGVKFPMGQALGGHMRR-HRNEKV 113
>At3g46080.1 68416.m04986 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 164
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 377 NHVCNICGKAFGYRNAMMKHQRRVHKREKMLHGRM 481
+H C ICG F A+ H RR H+ EK G +
Sbjct: 84 SHPCPICGVEFPMGQALGGHMRR-HRSEKASPGTL 117
>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 495
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 18 TMHDPDHKKYVCDKCGKSFRLRC 86
T DP Y CD CG S L+C
Sbjct: 396 TKTDPSVFYYTCDDCGVSLHLKC 418
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 299 CDGCKRAFHSKLLLQRHYQADHVGIKNHVCNIC 397
CD C++ FH K + +A+H IK++ C C
Sbjct: 219 CDACEKWFHGKCVKITPAKAEH--IKHYKCPTC 249
>At2g01970.1 68415.m00132 endomembrane protein 70, putative
Length = 592
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 322 ESSLAPVTFKLWYFMLKHVSIQVLLNKKR 236
ES P FK YF+ KH+ ++L NK R
Sbjct: 143 ESKSDPSEFK--YFLYKHIQFEILYNKDR 169
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 356 ADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHKRE 460
AD + H C ICGK F R+A ++ R H E
Sbjct: 209 ADLLAKYTHYCQICGKGF-KRDANLRMHMRAHGDE 242
>At3g49930.1 68416.m05460 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 215
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 9 DHMTMHD-PDHKK-YVCDKCGKSFRLRCAYHNHNRRHTNDFS 128
DH ++ DH+K Y C CGKSF A H H S
Sbjct: 80 DHHSLSPLSDHQKDYKCSVCGKSFPSYQALGGHKTSHRKPVS 121
>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 252
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 299 CDGCKRAFHSKLLLQRHYQADHVGIKNHVCNIC 397
CD C++ FH K + +A+H IK++ C C
Sbjct: 214 CDACEKWFHGKCVKITPAKAEH--IKHYKCPSC 244
>At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 619
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 431 KHQRRVHKREKMLHGRMPSYLMA 499
KHQR+ KR + LH R YLM+
Sbjct: 129 KHQRQKEKRAQELHERCCQYLMS 151
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +2
Query: 293 FKCDGCKRAFHSKLLLQ-RHYQADHVGIKNHV----CNICGK-AFGYRNAMMKHQRRV-H 451
F C C+ F ++ + +HY +H +K+H C +C + G NA + ++R+
Sbjct: 310 FACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAAHEIKKRMAE 369
Query: 452 KREKMLHG 475
+R K G
Sbjct: 370 ERSKAEQG 377
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +2
Query: 293 FKCDGCKRAFHSKLLLQ-RHYQADHVGIKNHV----CNICGK-AFGYRNAMMKHQRRV-H 451
F C C+ F ++ + +HY +H +K+H C +C + G NA + ++R+
Sbjct: 310 FACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAAHEIKKRMAE 369
Query: 452 KREKMLHG 475
+R K G
Sbjct: 370 ERSKAEQG 377
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 293 FKCDGCKRAFHSKLLLQRHYQADH 364
F C C R F S++ LQ H +A H
Sbjct: 260 FGCKSCTRTFTSEMGLQSHTKAKH 283
>At4g35700.1 68417.m05067 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 275
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 353 QADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHK 454
Q H+ +CN+CGK F A+ H R+ HK
Sbjct: 133 QLTHLPQGPPMCNVCGKGFASWKAVFGHLRQ-HK 165
>At4g28190.1 68417.m04041 expressed protein
Length = 237
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +3
Query: 51 CDKCGKSFRLRCAYHNHNRRHTN---DFSYKCQFCPY 152
C+ CGK R R + R H N D ++KC PY
Sbjct: 142 CNDCGKERRFRLRSRDECRLHHNAMGDPNWKCSDFPY 178
>At1g69690.1 68414.m08020 TCP family transcription factor, putative
similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
Oryza sativa]
Length = 325
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -1
Query: 553 SYYIEKNXNQNSVQHVMHSHQIRWHSSVKHFLSFMNTSLVFHHSV------SVTKSLPTN 392
SYY + +Q+ H+ H HQ+R + H S ++ L+ H+ + S SLPT+
Sbjct: 141 SYYFH-SPHQSMTHHLQHQHQVR-PKNESHSSSSSSSQLLDHNQMGNYLVQSTAGSLPTS 198
>At1g26790.1 68414.m03261 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2b
GI:3386548 from [Arabidopsis thaliana]
Length = 396
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 30 PDHKKYVCDKCGKSFRLRCAYHNHNRRHTNDFSYKCQ 140
PD K C +C + C Y+N+N F KCQ
Sbjct: 131 PD-KILPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQ 166
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +2
Query: 293 FKCDGCKRAFHSKLLLQ-RHYQADHVGIKNHV----CNICGK-AFGYRNAMMKHQRRV-H 451
F C C+ F ++ + +HY +H +K+H C +C + G NA + ++R+
Sbjct: 275 FACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAAHEIKKRMAE 334
Query: 452 KREKMLHG 475
+R K G
Sbjct: 335 ERSKAEQG 342
>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
identical to Cys2/His2-type zinc finger protein 2
[Arabidopsis thaliana] gi|6009885|dbj|BAA85107
Length = 273
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 374 KNHVCNICGKAFGYRNAMMKHQR 442
K H C+IC K F A+ H+R
Sbjct: 163 KIHECSICHKVFPTGQALGGHKR 185
Score = 21.8 bits (44), Expect(2) = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 293 FKCDGCKRAFHSKLLLQRHYQADH 364
+KC+ C++AF S L H +A H
Sbjct: 106 YKCNVCEKAFPSYQALGGH-KASH 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,087
Number of Sequences: 28952
Number of extensions: 274031
Number of successful extensions: 1126
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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