Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20900
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 156 3e-39
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 155 4e-39
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 135 5e-33
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 135 5e-33
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 124 9e-30
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 73 3e-14
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 62 1e-10
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 46 5e-06
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.82
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 4.4
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.4
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 4.4
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 4.4
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 5.8
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 7.7
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 7.7
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 7.7
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 7.7
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 156 bits (378), Expect = 3e-39
Identities = 72/90 (80%), Positives = 81/90 (90%)
Frame = +3
Query: 246 TKCLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 425
T LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD
Sbjct: 191 TNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKD 250
Query: 426 LATNKRALRRLRTACERAKRTLXSSTQAAL 515
+ N RA+RRLRTACERAKRTL SS QA++
Sbjct: 251 ITGNARAVRRLRTACERAKRTLSSSAQASI 280
Score = 136 bits (328), Expect = 4e-33
Identities = 66/85 (77%), Positives = 74/85 (87%)
Frame = +1
Query: 4 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 183
KTF PEE+SSMVL KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLR
Sbjct: 110 KTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLR 169
Query: 184 IINEPTAAAIAYGLDKKGTGERNVL 258
IINEPTAAAIAYGLD+ E NVL
Sbjct: 170 IINEPTAAAIAYGLDRSNQHETNVL 194
Score = 100 bits (240), Expect = 2e-22
Identities = 47/59 (79%), Positives = 56/59 (94%)
Frame = +2
Query: 506 SSIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 682
+SIEIDSL+EGIDFYTSITRARFEEL ADLFR+TMEPVEK LRD+K+DK+ +++IVLVG
Sbjct: 278 ASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVG 336
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 155 bits (377), Expect = 4e-39
Identities = 71/87 (81%), Positives = 81/87 (93%)
Frame = +3
Query: 255 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 434
LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+
Sbjct: 194 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITG 253
Query: 435 NKRALRRLRTACERAKRTLXSSTQAAL 515
N RA+RRLRTACERAKRTL SS QA++
Sbjct: 254 NARAVRRLRTACERAKRTLSSSAQASI 280
Score = 142 bits (344), Expect = 4e-35
Identities = 69/85 (81%), Positives = 75/85 (88%)
Frame = +1
Query: 4 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 183
KTF PEE+SSMVL KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLR
Sbjct: 110 KTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLR 169
Query: 184 IINEPTAAAIAYGLDKKGTGERNVL 258
IINEPTAAAIAYGLD+ GE NVL
Sbjct: 170 IINEPTAAAIAYGLDRSNQGESNVL 194
Score = 101 bits (242), Expect = 1e-22
Identities = 48/59 (81%), Positives = 55/59 (93%)
Frame = +2
Query: 506 SSIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 682
+SIEIDSLFEGIDFYTSITRARFEEL ADLFR TMEPVE+ LRD+K+DKA +++IVLVG
Sbjct: 278 ASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVG 336
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 135 bits (327), Expect = 5e-33
Identities = 63/85 (74%), Positives = 78/85 (91%)
Frame = +1
Query: 4 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 183
K F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATKDAGTI+GLNV+R
Sbjct: 143 KKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIR 202
Query: 184 IINEPTAAAIAYGLDKKGTGERNVL 258
I+NEPTAAAIAYGLDK T E++++
Sbjct: 203 IVNEPTAAAIAYGLDKTDT-EKHIV 226
Score = 103 bits (248), Expect = 2e-23
Identities = 43/81 (53%), Positives = 65/81 (80%)
Frame = +3
Query: 255 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 434
+++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D+
Sbjct: 226 VVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTK 285
Query: 435 NKRALRRLRTACERAKRTLXS 497
+ +A+ +L+ E+AKRTL S
Sbjct: 286 DLKAMGKLKREVEKAKRTLSS 306
Score = 72.5 bits (170), Expect = 5e-14
Identities = 33/70 (47%), Positives = 50/70 (71%)
Frame = +2
Query: 473 EGKEDLXIVHTSSIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDK 652
+ K L + IEI+S F G DF +++RA+FEE+N DLF+ T++PVE+ L+D+ + K
Sbjct: 299 KAKRTLSSQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKK 358
Query: 653 AQIHDIVLVG 682
++I DIVLVG
Sbjct: 359 SEIDDIVLVG 368
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 135 bits (327), Expect = 5e-33
Identities = 62/87 (71%), Positives = 73/87 (83%)
Frame = +3
Query: 255 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 434
LIFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D++
Sbjct: 198 LIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISD 257
Query: 435 NKRALRRLRTACERAKRTLXSSTQAAL 515
+ RALRRLR+ACERAKR L S TQ +
Sbjct: 258 DPRALRRLRSACERAKRALSSVTQTTV 284
Score = 124 bits (300), Expect = 9e-30
Identities = 62/85 (72%), Positives = 70/85 (82%)
Frame = +1
Query: 4 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 183
K F +E+S+MVLTKMKE +EA L K V+ AVITVPAYF+DSQR ATKDAG I+GLNVLR
Sbjct: 114 KQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLR 173
Query: 184 IINEPTAAAIAYGLDKKGTGERNVL 258
IINEPTAAAIAYGLD K +NVL
Sbjct: 174 IINEPTAAAIAYGLDAKSDKPKNVL 198
Score = 83.4 bits (197), Expect = 3e-17
Identities = 38/68 (55%), Positives = 53/68 (77%)
Frame = +2
Query: 479 KEDLXIVHTSSIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQ 658
K L V +++E+DSL GIDF +SITRARFE++NA F++T++PV K L+D+K+ KA
Sbjct: 273 KRALSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFKATIDPVAKVLKDSKVPKAD 332
Query: 659 IHDIVLVG 682
+HDIVLVG
Sbjct: 333 VHDIVLVG 340
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 124 bits (300), Expect = 9e-30
Identities = 55/77 (71%), Positives = 67/77 (87%)
Frame = +1
Query: 4 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 183
KT+ P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR
Sbjct: 156 KTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLR 215
Query: 184 IINEPTAAAIAYGLDKK 234
++NEPTAAA+AYGLDKK
Sbjct: 216 VVNEPTAAALAYGLDKK 232
Score = 101 bits (241), Expect = 1e-22
Identities = 45/80 (56%), Positives = 61/80 (76%)
Frame = +3
Query: 258 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 437
+FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+ +
Sbjct: 239 VFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKD 298
Query: 438 KRALRRLRTACERAKRTLXS 497
+ A++R+R A E+AK L S
Sbjct: 299 RLAVQRIREAAEKAKCELSS 318
Score = 43.2 bits (97), Expect = 4e-05
Identities = 17/42 (40%), Positives = 33/42 (78%)
Frame = +2
Query: 557 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 682
I+RA+FE+L L R T++P +++L+DA + ++I++++LVG
Sbjct: 343 ISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVG 384
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/86 (40%), Positives = 50/86 (58%)
Frame = +3
Query: 258 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 437
I D G + VSI+ G F +KST D +LG + D ++++F EFK KYK D+ +N
Sbjct: 203 IVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDVLSN 262
Query: 438 KRALRRLRTACERAKRTLXSSTQAAL 515
+A RL TA ER K+ L ++ A L
Sbjct: 263 PKATFRLATAVERLKKVLSANANAPL 288
Score = 65.3 bits (152), Expect = 8e-12
Identities = 31/63 (49%), Positives = 45/63 (71%)
Frame = +1
Query: 43 TKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 222
TK+K AEA L +V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA+ YG
Sbjct: 127 TKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYG 186
Query: 223 LDK 231
+ K
Sbjct: 187 ITK 189
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 512 IEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 682
+ ++ + ID + I R+ FEEL L P+EK+L A + K ++ I +VG
Sbjct: 288 LNVEMIMNDIDASSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKEDLYSIEMVG 344
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 61.7 bits (143), Expect = 1e-10
Identities = 28/86 (32%), Positives = 51/86 (59%)
Frame = +3
Query: 255 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 434
++ + G +VS+++++ G+ + ++ D +LGGE + +VN F +EF++K D
Sbjct: 220 VVANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFEKKNGIDPRK 279
Query: 435 NKRALRRLRTACERAKRTLXSSTQAA 512
N R+L +LR CE KR L + T A+
Sbjct: 280 NARSLAKLRAQCEITKRVLSNGTTAS 305
Score = 58.8 bits (136), Expect = 7e-10
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +1
Query: 1 DKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVL 180
+K E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL VL
Sbjct: 135 EKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVL 194
Query: 181 RIINEPTAAAIA 216
++I++P A +A
Sbjct: 195 QLIHDPAAVILA 206
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +2
Query: 503 TSSIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 682
T+S +DSL +GIDF++SI R R++ + + V +++ A M+ I +++L G
Sbjct: 303 TASAAVDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAG 362
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = +1
Query: 1 DKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVL 180
++ + EE+ +M + AE + + + V+TVP +FN+ QR +A I +VL
Sbjct: 132 EENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVL 191
Query: 181 RIINEPTAAAIAYGLDK 231
+I++ A AI Y L +
Sbjct: 192 ALIDDNVAVAIEYSLSR 208
Score = 45.6 bits (103), Expect = 7e-06
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +2
Query: 518 IDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 682
I+ L +GIDF ITR+ E L D+ + +EP+ K+L+ A + ++I+ I+L G
Sbjct: 318 IEELADGIDFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILFG 372
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 0.82
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 370 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 260
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 665 RGFEPYPSWHHGETSPLAP 609
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -1
Query: 307 SMVRMDTSKVPPPRSKIRHFVLQYPFCQDRKQSQQQSVH 191
S++ + S++P R + F+L +PF Q+Q +V+
Sbjct: 52 SVIPYEKSQIPVLRFIFKRFILTFPFLDPDSQNQLWNVN 90
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 406 LNSWTKWLTMRLSKSSPPKWVSPAVDF 326
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +1
Query: 226 DKKGTGERNVLS----LTSAAVPSTCPSLPSRMVSSR*NPPPATPTWEVR--TLTIAWST 387
D K GE N+ + + P T S P S NPP + P +V + T+A ST
Sbjct: 53 DDKTVGEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAEST 112
Query: 388 TLSRS 402
+ +++
Sbjct: 113 STTQT 117
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 524 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 682
SL G+D+YT I E +A +S+ E +K D + D++ D + VG
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRSN-DDSIGVG 380
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -3
Query: 587 RSAPRSEHE*LTCRSQYPQRENLSQCCLCGRXQGPLCPLTC 465
R+ S +E L +YP R N C C LC TC
Sbjct: 241 RAEDISSNELLPTPEEYPYRYNNDYCSACHGPGNFLCCETC 281
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 591 ICSGLPWSQ----WRSLSVMPRWIRLKSTILYWW 680
ICS LP + W + S PR+ R S ++ WW
Sbjct: 133 ICSALPAAGSIYLWAAESAGPRFGRFVSFLVAWW 166
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 25 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 147
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 274 AVPSTCPSLPSRMVSSR*NPPPATPTW 354
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,085
Number of Sequences: 5004
Number of extensions: 61013
Number of successful extensions: 232
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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