Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20899
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   119   8e-28
U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   6.0  
Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   7.9  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   7.9  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    27   7.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   7.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   7.9  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  119 bits (287), Expect = 8e-28
 Identities = 52/61 (85%), Positives = 55/61 (90%)
 Frame = +3

Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQR 434
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWHR VN+ Q+
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 435 R 437
           R
Sbjct: 120 R 120



 Score = 56.4 bits (130), Expect = 9e-09
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58


>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 300 FGRQHVQYPMIQHWFVTSLLAHAV--GLPRVLGHRNVNIID-QVRTD 169
           F  + V+ P+   WFVTSL+  AV   +   + H  V ++D ++R+D
Sbjct: 386 FSPETVEDPVTNGWFVTSLIREAVEENIKEAICHILVQLLDSKIRSD 432


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 369 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 286
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 166 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHKPVLNHGVLDVLS 294
           P + D ++DVH+S S    Q     K     P L H     LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +1

Query: 67  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 240
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical
           protein F53B6.9 protein.
          Length = 75

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 378 TYVHHDTCYRRHPDRTYEYHHHGHAEF 298
           TY HH   Y      ++E+HHH H  +
Sbjct: 20  TYAHHSHSY----SHSHEHHHHHHGGY 42


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 173 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 60
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 173 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 60
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 300 IPRVRGGGTHRSGQGAFGNMCRGG 371
           +P   GGG   S Q A GN C GG
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGG 49


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 181  GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLKVGLPI 74
            GPDG    T   G +++PA      + PT K G P+
Sbjct: 3410 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3445


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 181  GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLKVGLPI 74
            GPDG    T   G +++PA      + PT K G P+
Sbjct: 3455 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3490


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 181  GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLKVGLPI 74
            GPDG    T   G +++PA      + PT K G P+
Sbjct: 3455 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3490


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 182 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 69
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 182 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 69
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,582,029
Number of Sequences: 27780
Number of extensions: 196615
Number of successful extensions: 682
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)