Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20898
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 31 0.20
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.26
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.80
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 28 1.4
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 28 1.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.8
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 3.2
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 4.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.6
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.9
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1
Query: 211 VPTALAGLGASHGLTGLVRTRVQLNVFEQLHLMFLVRSTARAMCDASVLLEKANVY 378
+P A A LT L RT Q +V E LH + ++STA C +NVY
Sbjct: 199 MPAASAPEFIQDTLTKLFRTSTQRSVDELLHPLRSIKSTAELECMKEAANISSNVY 254
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 233 SPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
+PA V T P RP + P+ +AP P +++P P GP
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 236 PSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLP 132
P P +V PS PP GP P+AP +P + P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGP-PSAPPPPLPASSAP 1741
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 176 RPTAPIT*IPKLTLPDSTIQHAPP 105
RP P + PK +PDS+ HAPP
Sbjct: 1358 RPAVPTS--PKPQIPDSSNVHAPP 1379
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 236 PSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPV 102
P P +VG P PP+ P PT P +P + +P + APPV
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVPT-PSAGLPPVPVPTA---KAPPV 1239
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -2
Query: 242 LAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPV 102
+ P P A G P PP+ P P P +P + P ST APPV
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVP-KPSVGVPPVP-PPST---APPV 1219
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 260 KPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPD 129
KP P P+PA V T+P PA P+PT + P L L D
Sbjct: 324 KPAAP--VPTPAPPVKTSPH--PASYRPQPTRNVEVRPLLMLDD 363
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 38 AIRALETLLPGEKLSPLLKEVLQEERAVSLNQAKSVLE 151
A+R++ LLP E +L ++L +ERA+ +A S+++
Sbjct: 1127 ALRSVIHLLPNELFCTVLGKLLHDERALLRRKALSIVQ 1164
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = -1
Query: 210 NSLSSTGTPWTTSNGPHNMNSKTDFA*FNDTARSSCRTSFRSGLSFSPGRSVSSALIAHR 31
+SLS +GT +TS P + ++T + F T+ SS +S S S SP S S + + +
Sbjct: 119 SSLSYSGTISSTSIAPSMIGTRTSSSYF-ITSSSSTPSSSSSSSSSSPSSSSSKSSSSSK 177
Query: 30 QREFRGSS 7
SS
Sbjct: 178 SSSSSSSS 185
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -1
Query: 237 SKSSQRCRDNSLSSTGTPWTTSNGPHNMNSKTDFA*FNDTARSSCRTSFRSGLSFSPGRS 58
S SS S SS+ TP TTS+ + +S + + + ++ SS ++S RS + R+
Sbjct: 124 SSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSS--SKSSSSSSKSSSRSSSRTTSHRT 181
Query: 57 VSSALIAHRQREF 19
S ++R F
Sbjct: 182 TSHKSSSYRPTVF 194
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTA 165
P + PS +S T P PA +GP PTA
Sbjct: 304 PNTAMMGPSYSSFGDTDPRTYPAGMGPNPTA 334
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -2
Query: 365 FSRSTEASHIALAVDRTRNIRCSCSKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAH 186
+S S +A+ + L + + T S + + + +RPWL PS V T ++
Sbjct: 258 YSGSDDATDVLLVFGSAASELAKAAVTSSVAVAIVRVLRPWL-PSKLQEVLPTSTKRLTV 316
Query: 185 LGPRPTAP 162
L P + P
Sbjct: 317 LEPITSLP 324
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1723
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1694 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1701 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1744
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
S ++S T P P +P+ S T+PS P PT+P
Sbjct: 1708 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 239 APSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
AP PA + P+ PP R + P P +LP S PP P
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTPP-SLPPSAPPSLPPSAP 436
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 251 RPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPD 129
+P PSP ++ +T PP+ + PT+ ++ P L +P+
Sbjct: 189 KPARVPSPKKSLSSTIKSPPSRV-KLPTSILSKSPPLKVPN 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,013
Number of Sequences: 5004
Number of extensions: 57997
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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