Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20897
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.38 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.38 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.5  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   6.2  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   8.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 454 AVPYQSRLCDPPLN*HHAFSVQPRTPLAPHQVPP 353
           A PY   +   PL  H AF V+   P  PH  PP
Sbjct: 716 ASPY---MLQSPLTPHEAFDVKLPPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 454 AVPYQSRLCDPPLN*HHAFSVQPRTPLAPHQVPP 353
           A PY   +   PL  H AF V+   P  PH  PP
Sbjct: 608 ASPY---MLQSPLTPHEAFDVKLPPPPHPHHQPP 638


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 74  EFNEVFNDVRVLLNN 118
           EFN VFND R +  N
Sbjct: 452 EFNTVFNDQRTVFAN 466


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 491 RTIGTVVAFGVVFDGRRACHRVTWNSTCSSSL 586
           RT+G++  F  +F  ++  +R +  +T SSSL
Sbjct: 316 RTLGSLPPFKWLFKKKKRRNRESTTNTQSSSL 347


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 241 WRKVFDPRSKCSFRY 285
           W +VFD + K  ++Y
Sbjct: 306 WTRVFDDQQKVPYKY 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,487
Number of Sequences: 336
Number of extensions: 3926
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)