Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20897
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    45   1e-05
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   2.9  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    27   2.9  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   5.1  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   6.8  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    25   9.0  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    25   9.0  

>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 26/86 (30%), Positives = 43/86 (50%)
 Frame = +3

Query: 507 SWRSVWSLTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRL 686
           SWR + +  V     +L G   ++VHYYEDGNV L +S+ I      S  V    +   +
Sbjct: 154 SWRCICNYNVS--EKKLEGRSHIRVHYYEDGNVWLDASRPI------SATVEETSKLYEV 205

Query: 687 VSDAENTYQTAISDNYKTMSDTTFKD 764
           ++  EN  Q + +    +++D  FK+
Sbjct: 206 LAQVENGIQQSFNVELSSLNDKKFKE 231



 Score = 32.7 bits (71), Expect = 0.059
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 53  ILHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHN 232
           I  SPPGE N+V +D+R +  +D   +E        Y++D  + V +   E   +I+  N
Sbjct: 10  IRESPPGEVNQVVHDIRDIGLSD---EEAIHEQLKLYHEDYNSSVSISDDE-KVIISADN 65

Query: 233 ELGGGRF 253
            L G R+
Sbjct: 66  RLEGNRY 72



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 433 VDSGTVQLVACIEDHQFQPKNYWNG 507
           V+S T+ LV+     ++ PKNYWNG
Sbjct: 133 VESFTIVLVSS----KYNPKNYWNG 153


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 77  FNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVR 190
           FN V++ +   L N++      SG+F+Q    QLTP+R
Sbjct: 183 FNVVYSRI---LRNESFQTPSFSGSFSQTGTYQLTPIR 217


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 230 NELGGGRFSILAPSVLSGMTIYAKKR 307
           NELG    SI APS++SGM+  ++K+
Sbjct: 230 NELGVPFISISAPSIVSGMSGESEKK 255


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 397 SVQPRTPLAPHQVPPAKAHP 338
           +VQ ++PL P + PP KA P
Sbjct: 6   AVQSKSPLLPKENPPVKAFP 25


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 145 WSLRSIQQGSTHARTSRRLRAVYTHHRPQRTWWRKVFDPRSKCSFRYDHLRKE 303
           W LR ++  S+  +    LR  Y +    + WW+KV D    C  + + L+KE
Sbjct: 132 WQLRHLRVASSQ-QLPVGLRKQYPNIIRGKIWWKKVHDNCQLCGQQCE-LKKE 182


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 56  LHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQL 178
           LH  PG  +    ++RV ++  T LK  A  AF  ++  QL
Sbjct: 402 LHEHPGLVDLGSENIRVPIDEATALKSFAKAAFLGHSSAQL 442


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 489 GLKLVIFDTGDQLYRTRVDCAIHH*TSTMLL 397
           G+ L+ FD  D+LY+ +     HH  S +LL
Sbjct: 156 GINLMTFDNADELYKVKQ----HHPNSRLLL 182


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 565 VPRNSVAGPPTVKDHTERHDRSNSSWVETGDLR 467
           VP + +AG  TVK+  E  +   S W ++ D R
Sbjct: 76  VPLDIIAGDNTVKEDEEASNEIPSIWEDSDDER 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,220
Number of Sequences: 5004
Number of extensions: 66709
Number of successful extensions: 285
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)