Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20897
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 43 3e-04
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 32 0.58
01_06_1568 - 38299113-38299790,38300165-38300254,38300368-383004... 32 0.58
04_04_0898 + 29220860-29221462,29221547-29222545 30 1.8
01_01_0249 + 2047793-2048561,2049861-2049896,2050068-2051012,205... 30 2.3
01_01_0242 + 1997427-1997429,1997893-1998580,2000199-2000234,200... 30 2.3
06_03_1451 + 30252366-30252373,30252621-30252867,30253441-302538... 29 5.4
01_06_1012 - 33806190-33807875,33807963-33808331 29 5.4
06_02_0186 + 12787866-12788055,12788575-12788642,12788864-127890... 28 7.1
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 28 7.1
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Frame = +3
Query: 507 SWRSVWSLTV--GGPATELRGTLRVQVHYYEDGNVQLVSSKEIK 632
+WRS+W+L G E++G ++V HY+E+GNVQL ++ + K
Sbjct: 152 NWRSIWTLEFIDGLQLVEIKGKIQVGAHYFEEGNVQLDTNIDCK 195
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 92 NDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNEL 238
+DVR LL ++ + + A+ AF ++NK L + L +IT + EL
Sbjct: 3 DDVRALLGDEAVYEAAAAEAFPEHNKAHLVALELPDRSGDIIITTYGEL 51
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/79 (20%), Positives = 36/79 (45%)
Frame = +2
Query: 77 FNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFS 256
+NEV ND+ + + ++E A G + + K+++ L +H +G F+
Sbjct: 226 YNEVINDLLDPIGQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIASGEEHRHVGSNNFN 285
Query: 257 ILAPSVLSGMTIYAKKRPS 313
+++ + T+ + PS
Sbjct: 286 LVSSRSHTIFTLTIESSPS 304
>01_06_1568 -
38299113-38299790,38300165-38300254,38300368-38300484,
38300600-38300962
Length = 415
Score = 31.9 bits (69), Expect = 0.58
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = -2
Query: 391 QPRTPLAPHQVPPAKAHPLDRARRVHTRTLLCVDGHT*KNTWSEDRKPSATKFVVVGDEC 212
+PR P AP P A A D ARR G ED SA + G+
Sbjct: 274 RPRLPAAPPATPAADAERADAARRGDAVPEAAGGGAEAVGEREEDAGGSAEEHEGAGEGA 333
Query: 211 IQLGAFETYGRE 176
++ GA G E
Sbjct: 334 VEAGALAVVGEE 345
>04_04_0898 + 29220860-29221462,29221547-29222545
Length = 533
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 388 PRTPLAPHQVP--PAKAHPLDRARRVHTRTLL 299
PRT A H +P P +AHPL AR + + LL
Sbjct: 58 PRTAAAIHSIPAPPQQAHPLQPARSMDRQVLL 89
>01_01_0249 +
2047793-2048561,2049861-2049896,2050068-2051012,
2051215-2051264
Length = 599
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 446 RYSWSPVSKITSFNPRTIGTVVAFGVVFDGR 538
RY +S V+KITSF +G +GVVF GR
Sbjct: 324 RYKYSEVTKITSFLNYKLGE-GGYGVVFKGR 353
>01_01_0242 +
1997427-1997429,1997893-1998580,2000199-2000234,
2000786-2001114,2001178-2001855
Length = 577
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 446 RYSWSPVSKITSFNPRTIGTVVAFGVVFDGR 538
RY +S V+KITSF +G +GVVF G+
Sbjct: 298 RYKYSEVAKITSFLSNKLGE-GGYGVVFKGK 327
>06_03_1451 +
30252366-30252373,30252621-30252867,30253441-30253893,
30253971-30254555
Length = 430
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 179 TPVRLEGSELYTLITDHNELGGGRFSILAPSVLSGMTIYAKKRPSMNPTS 328
T VR + S L L+TDH L SI +P VLS + A S++ ++
Sbjct: 169 TNVRKKDSLLAELVTDHRSLPSENDSIGSPFVLSKVMYLANINDSLSASA 218
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 185 VRLEGSELYTLIT-DHNELGGGRFSILAPSVLSGMTIYAKKRPSMNPTSPIERMSLGGRH 361
+ L G + T + + NEL L V M ++AK RP + +P M L G
Sbjct: 94 LHLGGQDTITAFSIEDNELWKRHLLSLLSQVALAMYVFAKSRPGADILAPAVFMFLSG-- 151
Query: 362 LMRS*RRTW 388
+++ RTW
Sbjct: 152 ILKYGERTW 160
>06_02_0186 +
12787866-12788055,12788575-12788642,12788864-12789007,
12789112-12789268,12789344-12789366,12789487-12789495,
12789694-12790108,12790449-12790652,12790741-12791201,
12791206-12791476,12791560-12791951
Length = 777
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 422 WIAQSTLVRYSWSPVSKITSFNPRTIGTVVAFGVVF-DGRRACHRVTWNSTCSSSLL 589
W+A S ++ +S S+ + NPRT VF D R+A +T T +++LL
Sbjct: 319 WMASSVFMQSKFSGTSEAAALNPRTHYAYSPSATVFQDLRQAFEWMTDIDTAAAALL 375
>02_05_0924 -
32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +2
Query: 77 FNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFS 256
+NEV ND+ + ++E G F + K+++ L +H +G F+
Sbjct: 248 YNEVVNDLLNPAGQNLRIREDPQGTFVEGIKEEVVLSPAHALSLIAAGEEHRHVGSTNFN 307
Query: 257 ILA 265
+L+
Sbjct: 308 LLS 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,431,013
Number of Sequences: 37544
Number of extensions: 480036
Number of successful extensions: 1475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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