Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20897
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein... 108 4e-24
Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein... 108 4e-24
U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein p... 108 4e-24
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL110485-19|CAB60367.2| 529|Caenorhabditis elegans Hypothetical... 29 3.6
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 8.4
>Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 108 bits (260), Expect = 4e-24
Identities = 52/80 (65%), Positives = 58/80 (72%)
Frame = +2
Query: 14 ISDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRL 193
ISD EKVRI SDFI H+PPGEFNEVFN VR+LL ND LLK A AQYN Q PV+L
Sbjct: 4 ISDAEKVRIASDFIKHAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKL 63
Query: 194 EGSELYTLITDHNELGGGRF 253
+G TLIT +N+LG GRF
Sbjct: 64 DGVAKQTLITPYNDLGNGRF 83
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Frame = +3
Query: 510 WRSVWSLTVG---GPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEV-ATAKEF 677
WRS W++ VG + E++G + QVHYYEDGNVQL S KE + S + TAKE
Sbjct: 167 WRSEWNVPVGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEI 226
Query: 678 VRLVSDAENTYQTAISDNYKTMSDTTFK 761
+ +S+ E YQ A+ +NY MSDTTFK
Sbjct: 227 IHAISEEETIYQNAVQENYANMSDTTFK 254
Score = 71.7 bits (168), Expect = 5e-13
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +1
Query: 247 KVFDPRSKCSFRYDHLRKEASEYEPYEPDRA-DEPWRAALDEELTAYVAAH-*KHGASLV 420
+ +D SK SF+YDH+RKEA++ +P+ + E WR AL +L Y+ H K G +V
Sbjct: 82 RFYDEVSKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQTQLDIYIDDHYAKSGTGVV 141
Query: 421 VDRTVDSGTVQLVACIEDHQFQPKNYWNGR 510
R +G + CIE HQFQPKN+ NGR
Sbjct: 142 FAR---NGVFTI--CIESHQFQPKNFCNGR 166
>Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 108 bits (260), Expect = 4e-24
Identities = 52/80 (65%), Positives = 58/80 (72%)
Frame = +2
Query: 14 ISDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRL 193
ISD EKVRI SDFI H+PPGEFNEVFN VR+LL ND LLK A AQYN Q PV+L
Sbjct: 4 ISDAEKVRIASDFIKHAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKL 63
Query: 194 EGSELYTLITDHNELGGGRF 253
+G TLIT +N+LG GRF
Sbjct: 64 DGVAKQTLITPYNDLGNGRF 83
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Frame = +3
Query: 510 WRSVWSLTVG---GPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEV-ATAKEF 677
WRS W++ VG + E++G + QVHYYEDGNVQL S KE + S + TAKE
Sbjct: 167 WRSEWNVPVGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEI 226
Query: 678 VRLVSDAENTYQTAISDNYKTMSDTTFK 761
+ +S+ E YQ A+ +NY MSDTTFK
Sbjct: 227 IHAISEEETIYQNAVQENYANMSDTTFK 254
Score = 71.7 bits (168), Expect = 5e-13
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +1
Query: 247 KVFDPRSKCSFRYDHLRKEASEYEPYEPDRA-DEPWRAALDEELTAYVAAH-*KHGASLV 420
+ +D SK SF+YDH+RKEA++ +P+ + E WR AL +L Y+ H K G +V
Sbjct: 82 RFYDEVSKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQTQLDIYIDDHYAKSGTGVV 141
Query: 421 VDRTVDSGTVQLVACIEDHQFQPKNYWNGR 510
R +G + CIE HQFQPKN+ NGR
Sbjct: 142 FAR---NGVFTI--CIESHQFQPKNFCNGR 166
>U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein
protein 1 protein.
Length = 282
Score = 108 bits (260), Expect = 4e-24
Identities = 52/80 (65%), Positives = 58/80 (72%)
Frame = +2
Query: 14 ISDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRL 193
ISD EKVRI SDFI H+PPGEFNEVFN VR+LL ND LLK A AQYN Q PV+L
Sbjct: 4 ISDAEKVRIASDFIKHAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKL 63
Query: 194 EGSELYTLITDHNELGGGRF 253
+G TLIT +N+LG GRF
Sbjct: 64 DGVAKQTLITPYNDLGNGRF 83
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Frame = +3
Query: 510 WRSVWSLTVG---GPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEV-ATAKEF 677
WRS W++ VG + E++G + QVHYYEDGNVQL S KE + S + TAKE
Sbjct: 167 WRSEWNVPVGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEI 226
Query: 678 VRLVSDAENTYQTAISDNYKTMSDTTFK 761
+ +S+ E YQ A+ +NY MSDTTFK
Sbjct: 227 IHAISEEETIYQNAVQENYANMSDTTFK 254
Score = 71.7 bits (168), Expect = 5e-13
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +1
Query: 247 KVFDPRSKCSFRYDHLRKEASEYEPYEPDRA-DEPWRAALDEELTAYVAAH-*KHGASLV 420
+ +D SK SF+YDH+RKEA++ +P+ + E WR AL +L Y+ H K G +V
Sbjct: 82 RFYDEVSKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQTQLDIYIDDHYAKSGTGVV 141
Query: 421 VDRTVDSGTVQLVACIEDHQFQPKNYWNGR 510
R +G + CIE HQFQPKN+ NGR
Sbjct: 142 FAR---NGVFTI--CIESHQFQPKNFCNGR 166
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 433 LCDPPLN*HHAFSVQPRTPLAPHQVPPAKAHPLDRARRVH 314
L PPL+ HH +P++P PP H R+VH
Sbjct: 23 LTSPPLSPHHDLPPMEPSPISP-DPPPLPPHSFSPRRKVH 61
>Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.10 protein.
Length = 376
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 301 EASEYEPYEPDRADEPWRAALDEELT 378
E E EP P+ + WR+ +DEELT
Sbjct: 80 EVPEREPSTPNNSRSNWRSDMDEELT 105
>AL110485-19|CAB60367.2| 529|Caenorhabditis elegans Hypothetical
protein Y46G5A.24 protein.
Length = 529
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 526 DHTERHDRSNSSWVETGDLRYRRPAVPYQSRL 431
+H+E+HD SN ++ GD Y P+ R+
Sbjct: 119 NHSEKHDNSNVAFTPVGDSLYACTETPHMYRV 150
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 74 EFNEVFNDVRVLLNNDTLLKEGAS 145
++++V NDV L ++TLLK+ AS
Sbjct: 3725 QYDDVLNDVAAELEDETLLKQSAS 3748
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 74 EFNEVFNDVRVLLNNDTLLKEGAS 145
++++V NDV L ++TLLK+ AS
Sbjct: 4679 QYDDVLNDVAAELEDETLLKQSAS 4702
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 74 EFNEVFNDVRVLLNNDTLLKEGAS 145
++++V NDV L ++TLLK+ AS
Sbjct: 5582 QYDDVLNDVAAELEDETLLKQSAS 5605
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 74 EFNEVFNDVRVLLNNDTLLKEGAS 145
++++V NDV L ++TLLK+ AS
Sbjct: 6485 QYDDVLNDVAAELEDETLLKQSAS 6508
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 74 EFNEVFNDVRVLLNNDTLLKEGAS 145
++++V NDV L ++TLLK+ AS
Sbjct: 7388 QYDDVLNDVAAELEDETLLKQSAS 7411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,600,745
Number of Sequences: 27780
Number of extensions: 380439
Number of successful extensions: 1186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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