Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20897
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.14 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.44 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 220 HRPQRTWWRKVFDPRSKCSFRYDHLRKEAS-EYEPYEPDRADEPWRAALDEELTAYVA 390
           H P+    R  F+PR+  S  YD  ++E S E   +E       W+   DEE T   A
Sbjct: 155 HHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKETHIDWQPE-DEECTEATA 211


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 SLNTTRINSRPYVSKAPSCIHSSPTTTNL 239
           SL+ T  N + Y S+    +HS P+T N+
Sbjct: 364 SLDNTNTNDQDYSSQNYLTVHSFPSTLNI 392


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 135 KVLVEPSLNTTRINSRPYVSKAPSCIHSSPTTTN 236
           K+L+ PS+  T    R  + ++P C   +P  TN
Sbjct: 188 KLLIGPSIRITPAKKRIKLEQSPLC-PPAPRLTN 220


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 361 VPPAKAHPLDRARRVHTRTLLCVDGHT*KNTWSEDRKPSAT 239
           V P +   ++RA+ +  R   CV      +  S++ +PS+T
Sbjct: 240 VRPRRNVLIERAKSIRARRTECVTNSVTCDRPSDEAEPSST 280


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 272 VLSGMTIYAKKRPSMNPTSPIERMSLGGRHL 364
           +LSG  I  KKR  M    P +   + G ++
Sbjct: 133 LLSGGIILRKKREFMQKIWPFKEYQMNGNNI 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,468
Number of Sequences: 438
Number of extensions: 4996
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)